Cluster: HRGMv2_3678_CGC10
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3678
- CGC Family ID: CGCFAM_03694
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3678_4 | HRGMv2_3678_4_152 | 163545 | 164945 | + | AA4 |
| pfam | HRGMv2_3678_4 | HRGMv2_3678_4_153 | 165003 | 165917 | - | Choline_kinase | APH |
| TF | HRGMv2_3678_4 | HRGMv2_3678_4_154 | 165962 | 166729 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_3678_4 | HRGMv2_3678_4_155 | 166741 | 167949 | - | 8.A.59.2.1 |
Gene ID: HRGMv2_3678_4_152
Type: CAZyme
Location: 163545 - 164945 (+)
Type: CAZyme
Location: 163545 - 164945 (+)
Gene ID: HRGMv2_3678_4_153
Type: pfam
Location: 165003 - 165917 (-)
Type: pfam
Location: 165003 - 165917 (-)
Gene ID: HRGMv2_3678_4_154
Type: TF
Location: 165962 - 166729 (-)
Type: TF
Location: 165962 - 166729 (-)
Gene ID: HRGMv2_3678_4_155
Type: TC
Location: 166741 - 167949 (-)
Type: TC
Location: 166741 - 167949 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Caecibacter
Species
Caecibacter sp003467125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.