Genome Details
Selected Rep_genome_ID: HRGMv2_3645
Total Genomes Found: 8
Total Genomes Found: 8
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D succinifaciens
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| DM124_maxbin.004 | 2,466,616 | 100% | 0% | NA | Africa | H3AfricaPhase2 |
| GCA_022010075.1_ASM2201007v1_genomic | 2,545,551 | 94.81% | 0.7% | NA | Africa | H3AfricaPhase1 |
| GCF_021629765.1_ASM2162976v1_genomic | 2,410,585 | 97.2% | 0% | NA | Africa | H3AfricaPhase1 |
| GCF_021631445.1_ASM2163144v1_genomic | 2,286,144 | 98.6% | 0.09% | NA | Africa | H3AfricaPhase1 |
| HRGMv2_3645 | 2,647,359 | 100% | 0% | India | Asia | HRGM |
| MGYG000002242 | 2,466,093 | 100% | 0% | Peru | South America | UHGG |
| REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-I-L_I_19_2477.316 | 2,582,907 | 100% | 0% | NA | Africa | Hadza |
| Rep_21 | 2,447,049 | 100% | 0.699301% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_3645_CGC9 | CGCFAM_01794 | Yes | 13 | 2 | |
| HRGMv2_3645_CGC6 | CGCFAM_01866 | Yes | 13 | 1 | |
| HRGMv2_3645_CGC16 | CGCFAM_01978 | Yes | 5 | 1 | |
| HRGMv2_3645_CGC22 | CGCFAM_04094 | Yes | 4 | 1 | |
| HRGMv2_3645_CGC13 | CGCFAM_05907 | Yes | 8 | 2 | |
| HRGMv2_3645_CGC20 | CGCFAM_07342 | Yes | 4 | 1 |
Top CAZyme Families