Cluster: HRGMv2_3645_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3645
- CGC Family ID: CGCFAM_01978
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3645_3 | HRGMv2_3645_3_106 | 113807 | 114634 | - | 3.A.1.33.1 |
| TC | HRGMv2_3645_3 | HRGMv2_3645_3_107 | 114631 | 115473 | - | 3.A.1.32.3 |
| pfam | HRGMv2_3645_3 | HRGMv2_3645_3_108 | 115503 | 116060 | - | TrpP |
| pfam | HRGMv2_3645_3 | HRGMv2_3645_3_109 | 116203 | 117102 | + | Ank | Ank | Ank | Ank_2 | Ank_2 | Ank_3 | Ank_4 | Ank_4 | Ank_5 |
| CAZyme | HRGMv2_3645_3 | HRGMv2_3645_3_110 | 117109 | 118260 | + | GT28 |
Gene ID: HRGMv2_3645_3_106
Type: TC
Location: 113807 - 114634 (-)
Type: TC
Location: 113807 - 114634 (-)
Gene ID: HRGMv2_3645_3_107
Type: TC
Location: 114631 - 115473 (-)
Type: TC
Location: 114631 - 115473 (-)
Gene ID: HRGMv2_3645_3_108
Type: pfam
Location: 115503 - 116060 (-)
Type: pfam
Location: 115503 - 116060 (-)
Gene ID: HRGMv2_3645_3_109
Type: pfam
Location: 116203 - 117102 (+)
Type: pfam
Location: 116203 - 117102 (+)
Gene ID: HRGMv2_3645_3_110
Type: CAZyme
Location: 117109 - 118260 (+)
Type: CAZyme
Location: 117109 - 118260 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D succinifaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.