Genome Details
Selected Rep_genome_ID: HRGMv2_2516
Total Genomes Found: 3
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Schleiferilactobacillus
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR060864 | 2,778,793 | 97.64% | 0.52% | China | Asia | CGMR |
| HRGMv2_2516 | 3,104,706 | 99.21% | 0.523% | South Korea | Asia | HRGM |
| MGYG000002774 | 3,078,759 | 98.69% | 1.05% | United States | North America | UHGG |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2516_CGC15 | CGCFAM_00026 | Yes | 6 | 3 | |
| HRGMv2_2516_CGC6 | CGCFAM_00027 | Yes | 3 | 1 | |
| HRGMv2_2516_CGC9 | CGCFAM_00040 | Yes | 5 | 4 | |
| HRGMv2_2516_CGC46 | CGCFAM_00057 | Yes | 6 | 1 | |
| HRGMv2_2516_CGC52 | CGCFAM_00211 | Yes | 6 | 3 | |
| HRGMv2_2516_CGC40 | CGCFAM_00336 | Yes | 12 | 3 | alpha-glucan |
| HRGMv2_2516_CGC14 | CGCFAM_00339 | Yes | 8 | 1 | |
| HRGMv2_2516_CGC38 | CGCFAM_00510 | Yes | 5 | 1 | |
| HRGMv2_2516_CGC39 | CGCFAM_00558 | Yes | 6 | 1 | |
| HRGMv2_2516_CGC42 | CGCFAM_00585 | Yes | 13 | 4 | |
| HRGMv2_2516_CGC53 | CGCFAM_00817 | Yes | 7 | 2 | |
| HRGMv2_2516_CGC22 | CGCFAM_00853 | Yes | 4 | 1 | |
| HRGMv2_2516_CGC50 | CGCFAM_01230 | Yes | 9 | 3 | |
| HRGMv2_2516_CGC8 | CGCFAM_01715 | Yes | 4 | 1 | |
| HRGMv2_2516_CGC23 | CGCFAM_04180 | Yes | 4 | 1 | |
| HRGMv2_2516_CGC13 | CGCFAM_04341 | Yes | 3 | 1 | |
| HRGMv2_2516_CGC1 | CGCFAM_05595 | Yes | 11 | 6 | |
| HRGMv2_2516_CGC17 | CGCFAM_06075 | Yes | 3 | 1 |
Top CAZyme Families