Cluster: HRGMv2_2516_CGC42
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2516
- CGC Family ID: CGCFAM_00585
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2516_20 | HRGMv2_2516_20_1 | 79 | 2127 | - | GH92 |
| TF | HRGMv2_2516_20 | HRGMv2_2516_20_2 | 2140 | 3198 | - | GntR |
| CAZyme | HRGMv2_2516_20 | HRGMv2_2516_20_3 | 3331 | 4614 | + | GH125 |
| CAZyme | HRGMv2_2516_20 | HRGMv2_2516_20_4 | 4627 | 7287 | + | GH38 |
| CAZyme | HRGMv2_2516_20 | HRGMv2_2516_20_5 | 7293 | 8495 | + | GH28 |
| TC | HRGMv2_2516_20 | HRGMv2_2516_20_6 | 8917 | 9918 | + | 3.A.1.1.29 |
| TC | HRGMv2_2516_20 | HRGMv2_2516_20_7 | 9942 | 10862 | + | 3.A.1.1.29 |
| STP | HRGMv2_2516_20 | HRGMv2_2516_20_8 | 10926 | 12392 | + | SBP_bac_1 |
| pfam | HRGMv2_2516_20 | HRGMv2_2516_20_9 | 12483 | 13097 | + | DUF624 |
| TC | HRGMv2_2516_20 | HRGMv2_2516_20_10 | 13100 | 14827 | + | 8.A.59.2.1 |
| TF | HRGMv2_2516_20 | HRGMv2_2516_20_11 | 14802 | 16235 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2516_20 | HRGMv2_2516_20_12 | 16529 | 18235 | + | 3.A.1.106.13 |
| TC | HRGMv2_2516_20 | HRGMv2_2516_20_13 | 18232 | 19851 | + | 3.A.1.106.11 |
Gene ID: HRGMv2_2516_20_1
Type: CAZyme
Location: 79 - 2127 (-)
Type: CAZyme
Location: 79 - 2127 (-)
Gene ID: HRGMv2_2516_20_2
Type: TF
Location: 2140 - 3198 (-)
Type: TF
Location: 2140 - 3198 (-)
Gene ID: HRGMv2_2516_20_3
Type: CAZyme
Location: 3331 - 4614 (+)
Type: CAZyme
Location: 3331 - 4614 (+)
Gene ID: HRGMv2_2516_20_4
Type: CAZyme
Location: 4627 - 7287 (+)
Type: CAZyme
Location: 4627 - 7287 (+)
Gene ID: HRGMv2_2516_20_5
Type: CAZyme
Location: 7293 - 8495 (+)
Type: CAZyme
Location: 7293 - 8495 (+)
Gene ID: HRGMv2_2516_20_6
Type: TC
Location: 8917 - 9918 (+)
Type: TC
Location: 8917 - 9918 (+)
Gene ID: HRGMv2_2516_20_7
Type: TC
Location: 9942 - 10862 (+)
Type: TC
Location: 9942 - 10862 (+)
Gene ID: HRGMv2_2516_20_8
Type: STP
Location: 10926 - 12392 (+)
Type: STP
Location: 10926 - 12392 (+)
Gene ID: HRGMv2_2516_20_9
Type: pfam
Location: 12483 - 13097 (+)
Type: pfam
Location: 12483 - 13097 (+)
Gene ID: HRGMv2_2516_20_10
Type: TC
Location: 13100 - 14827 (+)
Type: TC
Location: 13100 - 14827 (+)
Gene ID: HRGMv2_2516_20_11
Type: TF
Location: 14802 - 16235 (+)
Type: TF
Location: 14802 - 16235 (+)
Gene ID: HRGMv2_2516_20_12
Type: TC
Location: 16529 - 18235 (+)
Type: TC
Location: 16529 - 18235 (+)
Gene ID: HRGMv2_2516_20_13
Type: TC
Location: 18232 - 19851 (+)
Type: TC
Location: 18232 - 19851 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Schleiferilactobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.