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Cluster: HRGMv2_2516_CGC50

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2516_34 HRGMv2_2516_34_3 1312 1899 - 1.A.78.2.8
CAZyme HRGMv2_2516_34 HRGMv2_2516_34_4 1990 3618 - GH13_31
CAZyme HRGMv2_2516_34 HRGMv2_2516_34_5 3628 5934 - GH31_1
NULL(UNKNOWN) HRGMv2_2516_34 HRGMv2_2516_34_6 5936 6628 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2516_34 HRGMv2_2516_34_7 6633 7505 - 3.A.1.1.9
TC HRGMv2_2516_34 HRGMv2_2516_34_8 7521 8462 - 3.A.1.1.9
TC HRGMv2_2516_34 HRGMv2_2516_34_9 8520 10175 - 3.A.1.1.9
TF HRGMv2_2516_34 HRGMv2_2516_34_10 10245 11231 - LacI
CAZyme HRGMv2_2516_34 HRGMv2_2516_34_11 11568 13025 - GH1
Gene ID: HRGMv2_2516_34_3
Type: TC
Location: 1312 - 1899 (-)
Gene ID: HRGMv2_2516_34_4
Type: CAZyme
Location: 1990 - 3618 (-)
Gene ID: HRGMv2_2516_34_5
Type: CAZyme
Location: 3628 - 5934 (-)
Gene ID: HRGMv2_2516_34_6
Type:
Location: 5936 - 6628 (-)
Gene ID: HRGMv2_2516_34_7
Type: TC
Location: 6633 - 7505 (-)
Gene ID: HRGMv2_2516_34_8
Type: TC
Location: 7521 - 8462 (-)
Gene ID: HRGMv2_2516_34_9
Type: TC
Location: 8520 - 10175 (-)
Gene ID: HRGMv2_2516_34_10
Type: TF
Location: 10245 - 11231 (-)
Gene ID: HRGMv2_2516_34_11
Type: CAZyme
Location: 11568 - 13025 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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