Cluster: HRGMv2_2516_CGC46
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2516
- CGC Family ID: CGCFAM_00057
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2516_25 | HRGMv2_2516_25_8 | 5863 | 7275 | - | GT2 |
| pfam | HRGMv2_2516_25 | HRGMv2_2516_25_9 | 7391 | 8041 | - | Epimerase | NAD_binding_10 |
| TC | HRGMv2_2516_25 | HRGMv2_2516_25_10 | 8046 | 9449 | - | 2.A.1.3.61 |
| TF | HRGMv2_2516_25 | HRGMv2_2516_25_11 | 9442 | 9882 | - | MarR |
| pfam | HRGMv2_2516_25 | HRGMv2_2516_25_12 | 10068 | 11234 | - | DnaJ | DnaJ_CXXCXGXG | DnaJ_C |
| TC | HRGMv2_2516_25 | HRGMv2_2516_25_13 | 11357 | 13234 | - | 1.A.33.1.4 |
Gene ID: HRGMv2_2516_25_8
Type: CAZyme
Location: 5863 - 7275 (-)
Type: CAZyme
Location: 5863 - 7275 (-)
Gene ID: HRGMv2_2516_25_9
Type: pfam
Location: 7391 - 8041 (-)
Type: pfam
Location: 7391 - 8041 (-)
Gene ID: HRGMv2_2516_25_10
Type: TC
Location: 8046 - 9449 (-)
Type: TC
Location: 8046 - 9449 (-)
Gene ID: HRGMv2_2516_25_11
Type: TF
Location: 9442 - 9882 (-)
Type: TF
Location: 9442 - 9882 (-)
Gene ID: HRGMv2_2516_25_12
Type: pfam
Location: 10068 - 11234 (-)
Type: pfam
Location: 10068 - 11234 (-)
Gene ID: HRGMv2_2516_25_13
Type: TC
Location: 11357 - 13234 (-)
Type: TC
Location: 11357 - 13234 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Schleiferilactobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.