Cluster: HRGMv2_2516_CGC40
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2516
- CGC Family ID: CGCFAM_00336
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2516_18 | HRGMv2_2516_18_51 | 45154 | 45525 | - | 3.A.14.1.2 |
| pfam | HRGMv2_2516_18 | HRGMv2_2516_18_52 | 45553 | 46560 | - | T2SSF | T2SSF |
| TC | HRGMv2_2516_18 | HRGMv2_2516_18_53 | 46553 | 47512 | - | 3.A.14.1.2 |
| TC | HRGMv2_2516_18 | HRGMv2_2516_18_54 | 47617 | 49023 | - | 2.A.66.1.33 |
| pfam | HRGMv2_2516_18 | HRGMv2_2516_18_55 | 49159 | 49830 | - | Hydrolase | HAD_2 |
| CAZyme | HRGMv2_2516_18 | HRGMv2_2516_18_56 | 49878 | 52154 | - | GH65 |
| NULL(UNKNOWN) | HRGMv2_2516_18 | HRGMv2_2516_18_57 | 52147 | 52959 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2516_18 | HRGMv2_2516_18_58 | 53036 | 53893 | - | 3.A.1.1.27 |
| TC | HRGMv2_2516_18 | HRGMv2_2516_18_59 | 53899 | 55257 | - | 3.A.1.1.27 |
| TC | HRGMv2_2516_18 | HRGMv2_2516_18_60 | 55363 | 56607 | - | 3.A.1.1.27 |
| CAZyme | HRGMv2_2516_18 | HRGMv2_2516_18_61 | 56936 | 58714 | - | CBM34 | GH13_20 |
| CAZyme | HRGMv2_2516_18 | HRGMv2_2516_18_62 | 58721 | 60403 | - | GH13_31 |
Gene ID: HRGMv2_2516_18_51
Type: TC
Location: 45154 - 45525 (-)
Type: TC
Location: 45154 - 45525 (-)
Gene ID: HRGMv2_2516_18_52
Type: pfam
Location: 45553 - 46560 (-)
Type: pfam
Location: 45553 - 46560 (-)
Gene ID: HRGMv2_2516_18_53
Type: TC
Location: 46553 - 47512 (-)
Type: TC
Location: 46553 - 47512 (-)
Gene ID: HRGMv2_2516_18_54
Type: TC
Location: 47617 - 49023 (-)
Type: TC
Location: 47617 - 49023 (-)
Gene ID: HRGMv2_2516_18_55
Type: pfam
Location: 49159 - 49830 (-)
Type: pfam
Location: 49159 - 49830 (-)
Gene ID: HRGMv2_2516_18_56
Type: CAZyme
Location: 49878 - 52154 (-)
Type: CAZyme
Location: 49878 - 52154 (-)
Gene ID: HRGMv2_2516_18_57
Type:
Location: 52147 - 52959 (-)
Type:
Location: 52147 - 52959 (-)
Gene ID: HRGMv2_2516_18_58
Type: TC
Location: 53036 - 53893 (-)
Type: TC
Location: 53036 - 53893 (-)
Gene ID: HRGMv2_2516_18_59
Type: TC
Location: 53899 - 55257 (-)
Type: TC
Location: 53899 - 55257 (-)
Gene ID: HRGMv2_2516_18_60
Type: TC
Location: 55363 - 56607 (-)
Type: TC
Location: 55363 - 56607 (-)
Gene ID: HRGMv2_2516_18_61
Type: CAZyme
Location: 56936 - 58714 (-)
Type: CAZyme
Location: 56936 - 58714 (-)
Gene ID: HRGMv2_2516_18_62
Type: CAZyme
Location: 58721 - 60403 (-)
Type: CAZyme
Location: 58721 - 60403 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Schleiferilactobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.