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Cluster: HRGMv2_2516_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2516_1 HRGMv2_2516_1_10 11739 12998 + 3.A.1.1.45
CAZyme HRGMv2_2516_1 HRGMv2_2516_1_11 13098 15248 + GH65
CAZyme HRGMv2_2516_1 HRGMv2_2516_1_12 15293 18067 - CBM67 | GH78
CAZyme HRGMv2_2516_1 HRGMv2_2516_1_13 18064 19575 - GH43_12
CAZyme HRGMv2_2516_1 HRGMv2_2516_1_14 19590 21299 - GH3
TF HRGMv2_2516_1 HRGMv2_2516_1_15 21575 22588 + HTH_AraC
TF HRGMv2_2516_1 HRGMv2_2516_1_16 22667 23647 - HTH_AraC
CAZyme HRGMv2_2516_1 HRGMv2_2516_1_17 23783 26185 + GH2
pfam HRGMv2_2516_1 HRGMv2_2516_1_18 26333 27541 + Sugar_tr | MFS_1
peptidase HRGMv2_2516_1 HRGMv2_2516_1_19 27566 28516 + S09.UPW
CAZyme HRGMv2_2516_1 HRGMv2_2516_1_20 28691 31006 - GT51
Gene ID: HRGMv2_2516_1_10
Type: TC
Location: 11739 - 12998 (+)
Gene ID: HRGMv2_2516_1_11
Type: CAZyme
Location: 13098 - 15248 (+)
Gene ID: HRGMv2_2516_1_12
Type: CAZyme
Location: 15293 - 18067 (-)
Gene ID: HRGMv2_2516_1_13
Type: CAZyme
Location: 18064 - 19575 (-)
Gene ID: HRGMv2_2516_1_14
Type: CAZyme
Location: 19590 - 21299 (-)
Gene ID: HRGMv2_2516_1_15
Type: TF
Location: 21575 - 22588 (+)
Gene ID: HRGMv2_2516_1_16
Type: TF
Location: 22667 - 23647 (-)
Gene ID: HRGMv2_2516_1_17
Type: CAZyme
Location: 23783 - 26185 (+)
Gene ID: HRGMv2_2516_1_18
Type: pfam
Location: 26333 - 27541 (+)
Gene ID: HRGMv2_2516_1_19
Type: peptidase
Location: 27566 - 28516 (+)
Gene ID: HRGMv2_2516_1_20
Type: CAZyme
Location: 28691 - 31006 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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