Genome Details
Selected Rep_genome_ID: HRGMv2_2496
Total Genomes Found: 3
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Lactococcus
Species
Lactococcus cremoris
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR081029 | 2,474,056 | 100% | 4.53% | China | Asia | CGMR |
| HRGMv2_2496 | 2,431,648 | 99.62% | 0.754% | Italy(Sardinia) | Europe | HRGM |
| Rep_1163 | 2,386,509 | 96.5409% | 1.52201% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2496_CGC12 | CGCFAM_00015 | Yes | 4 | 3 | |
| HRGMv2_2496_CGC16 | CGCFAM_00026 | Yes | 7 | 1 | |
| PUL0683_HRGMv2_2496_C0 | CGCFAM_01252 | Yes | 4 | 1 | alpha-glucan |
| HRGMv2_2496_CGC6 | CGCFAM_02280 | Yes | 8 | 1 | |
| HRGMv2_2496_CGC14 | CGCFAM_02289 | Yes | 7 | 2 | xylan |
| PUL0402_HRGMv2_2496_C1 | CGCFAM_02289 | Yes | 5 | 1 | xylan |
| HRGMv2_2496_CGC24 | CGCFAM_04179 | Yes | 9 | 5 | |
| HRGMv2_2496_CGC15 | CGCFAM_04651 | Yes | 14 | 7 | |
| HRGMv2_2496_CGC4 | CGCFAM_07073 | Yes | 8 | 2 | |
| HRGMv2_2496_CGC3 | CGCFAM_07077 | Yes | 3 | 1 | |
| HRGMv2_2496_CGC32 | CGCFAM_08431 | Yes | 3 | 1 | |
| HRGMv2_2496_CGC21 | CGCFAM_10100 | Yes | 7 | 2 | |
| HRGMv2_2496_CGC11 | CGCFAM_10101 | Yes | 5 | 2 | |
| HRGMv2_2496_CGC5 | CGCFAM_10102 | Yes | 3 | 1 |
Top CAZyme Families