Cluster: HRGMv2_2496_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: xylan
- Genome ID: HRGMv2_2496
- CGC Family ID: CGCFAM_02289
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2496_5 | HRGMv2_2496_5_63 | 62329 | 63153 | + | GH11 |
| pfam | HRGMv2_2496_5 | HRGMv2_2496_5_64 | 63229 | 64734 | + | FGGY_N | FGGY_C |
| pfam | HRGMv2_2496_5 | HRGMv2_2496_5_65 | 64737 | 65741 | + | Aldose_epim |
| TC | HRGMv2_2496_5 | HRGMv2_2496_5_66 | 65811 | 67286 | + | 2.A.2.3.2 |
| NULL(UNKNOWN) | HRGMv2_2496_5 | HRGMv2_2496_5_67 | 67325 | 67567 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2496_5 | HRGMv2_2496_5_68 | 68164 | 69843 | + | CBM91 | GH43_11 |
| TC | HRGMv2_2496_5 | HRGMv2_2496_5_69 | 69861 | 70724 | + | 8.A.5.1.4 |
Gene ID: HRGMv2_2496_5_63
Type: CAZyme
Location: 62329 - 63153 (+)
Type: CAZyme
Location: 62329 - 63153 (+)
Gene ID: HRGMv2_2496_5_64
Type: pfam
Location: 63229 - 64734 (+)
Type: pfam
Location: 63229 - 64734 (+)
Gene ID: HRGMv2_2496_5_65
Type: pfam
Location: 64737 - 65741 (+)
Type: pfam
Location: 64737 - 65741 (+)
Gene ID: HRGMv2_2496_5_66
Type: TC
Location: 65811 - 67286 (+)
Type: TC
Location: 65811 - 67286 (+)
Gene ID: HRGMv2_2496_5_67
Type:
Location: 67325 - 67567 (+)
Type:
Location: 67325 - 67567 (+)
Gene ID: HRGMv2_2496_5_68
Type: CAZyme
Location: 68164 - 69843 (+)
Type: CAZyme
Location: 68164 - 69843 (+)
Gene ID: HRGMv2_2496_5_69
Type: TC
Location: 69861 - 70724 (+)
Type: TC
Location: 69861 - 70724 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Lactococcus
Species
Lactococcus cremoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.