Genome Details
Selected Rep_genome_ID: HRGMv2_2488
Total Genomes Found: 4
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus crispatus
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR061604 | 2,136,618 | 97.85% | 0.03% | China | Asia | CGMR |
| HRGMv2_2488 | 2,218,083 | 99.02% | 0% | South Korea | Asia | HRGM |
| Rep_1025 | 2,124,616 | 94.2641% | 0% | NA | NA | WIS |
| SPMP45_bin.44 | 2,282,614 | 98.93% | 0.97% | Singapore | Asia | SPMP |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2488_CGC15 | CGCFAM_00040 | Yes | 6 | 3 | |
| HRGMv2_2488_CGC12 | CGCFAM_00066 | Yes | 3 | 1 | beta-mannan |
| HRGMv2_2488_CGC22 | CGCFAM_00067 | Yes | 6 | 2 | galactan |
| HRGMv2_2488_CGC3 | CGCFAM_00094 | Yes | 5 | 1 | beta-mannan/fructan |
| HRGMv2_2488_CGC21 | CGCFAM_00097 | Yes | 8 | 2 | |
| HRGMv2_2488_CGC16 | CGCFAM_00195 | Yes | 5 | 2 | |
| PUL0230_HRGMv2_2488_C3 | CGCFAM_00336 | Yes | 10 | 3 | alpha-glucan |
| HRGMv2_2488_CGC7 | CGCFAM_00403 | Yes | 11 | 3 | |
| HRGMv2_2488_CGC13 | CGCFAM_00885 | Yes | 8 | 2 | |
| HRGMv2_2488_CGC18 | CGCFAM_01659 | Yes | 5 | 2 | |
| HRGMv2_2488_CGC5 | CGCFAM_02173 | Yes | 12 | 1 | |
| HRGMv2_2488_CGC19 | CGCFAM_04513 | Yes | 5 | 2 | |
| HRGMv2_2488_CGC27 | CGCFAM_05044 | Yes | 7 | 3 |
Top CAZyme Families