Cluster: HRGMv2_2488_CGC22
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: galactan
- Genome ID: HRGMv2_2488
- CGC Family ID: CGCFAM_00067
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2488_17 | HRGMv2_2488_17_19 | 15604 | 17046 | - | GH13_18 |
| CAZyme | HRGMv2_2488_17 | HRGMv2_2488_17_20 | 17058 | 19259 | - | GH36 |
| TC | HRGMv2_2488_17 | HRGMv2_2488_17_21 | 19269 | 20381 | - | 3.A.1.1.20 |
| TC | HRGMv2_2488_17 | HRGMv2_2488_17_22 | 20408 | 21241 | - | 3.A.1.1.28 |
| TC | HRGMv2_2488_17 | HRGMv2_2488_17_23 | 21256 | 22131 | - | 3.A.1.1.28 |
| TC | HRGMv2_2488_17 | HRGMv2_2488_17_24 | 22144 | 23400 | - | 3.A.1.1.28 |
Gene ID: HRGMv2_2488_17_19
Type: CAZyme
Location: 15604 - 17046 (-)
Type: CAZyme
Location: 15604 - 17046 (-)
Gene ID: HRGMv2_2488_17_20
Type: CAZyme
Location: 17058 - 19259 (-)
Type: CAZyme
Location: 17058 - 19259 (-)
Gene ID: HRGMv2_2488_17_21
Type: TC
Location: 19269 - 20381 (-)
Type: TC
Location: 19269 - 20381 (-)
Gene ID: HRGMv2_2488_17_22
Type: TC
Location: 20408 - 21241 (-)
Type: TC
Location: 20408 - 21241 (-)
Gene ID: HRGMv2_2488_17_23
Type: TC
Location: 21256 - 22131 (-)
Type: TC
Location: 21256 - 22131 (-)
Gene ID: HRGMv2_2488_17_24
Type: TC
Location: 22144 - 23400 (-)
Type: TC
Location: 22144 - 23400 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus crispatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.