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Cluster: HRGMv2_2488_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2488_4 HRGMv2_2488_4_29 25056 26438 + GH1
TC HRGMv2_2488_4 HRGMv2_2488_4_30 26438 27865 + 4.A.3.2.2
TF HRGMv2_2488_4 HRGMv2_2488_4_31 28022 28744 + GntR
CAZyme HRGMv2_2488_4 HRGMv2_2488_4_32 28755 30236 + GH1
pfam HRGMv2_2488_4 HRGMv2_2488_4_33 30339 30749 + DUF3284
TC HRGMv2_2488_4 HRGMv2_2488_4_34 30857 32209 - 4.A.3.2.8
NULL(UNKNOWN) HRGMv2_2488_4 HRGMv2_2488_4_35 32381 32893 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2488_4 HRGMv2_2488_4_36 33004 33375 - 4.A.3.2.8
TC HRGMv2_2488_4 HRGMv2_2488_4_37 33416 33754 - 4.A.3.2.4
TF HRGMv2_2488_4 HRGMv2_2488_4_38 34120 34824 + GntR
CAZyme HRGMv2_2488_4 HRGMv2_2488_4_39 34911 36359 + GH1
Gene ID: HRGMv2_2488_4_29
Type: CAZyme
Location: 25056 - 26438 (+)
Gene ID: HRGMv2_2488_4_30
Type: TC
Location: 26438 - 27865 (+)
Gene ID: HRGMv2_2488_4_31
Type: TF
Location: 28022 - 28744 (+)
Gene ID: HRGMv2_2488_4_32
Type: CAZyme
Location: 28755 - 30236 (+)
Gene ID: HRGMv2_2488_4_33
Type: pfam
Location: 30339 - 30749 (+)
Gene ID: HRGMv2_2488_4_34
Type: TC
Location: 30857 - 32209 (-)
Gene ID: HRGMv2_2488_4_35
Type:
Location: 32381 - 32893 (-)
Gene ID: HRGMv2_2488_4_36
Type: TC
Location: 33004 - 33375 (-)
Gene ID: HRGMv2_2488_4_37
Type: TC
Location: 33416 - 33754 (-)
Gene ID: HRGMv2_2488_4_38
Type: TF
Location: 34120 - 34824 (+)
Gene ID: HRGMv2_2488_4_39
Type: CAZyme
Location: 34911 - 36359 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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