Cluster: HRGMv2_2488_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: beta-mannan/fructan
- Genome ID: HRGMv2_2488
- CGC Family ID: CGCFAM_00094
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2488_1 | HRGMv2_2488_1_215 | 200975 | 202549 | + | 3.A.1.106.15 |
| pfam | HRGMv2_2488_1 | HRGMv2_2488_1_216 | 203156 | 204211 | + | RVT_1 | GIIM |
| TF | HRGMv2_2488_1 | HRGMv2_2488_1_217 | 204529 | 205515 | - | LacI |
| CAZyme | HRGMv2_2488_1 | HRGMv2_2488_1_218 | 205531 | 206988 | - | GH32 |
| TC | HRGMv2_2488_1 | HRGMv2_2488_1_219 | 207199 | 209148 | + | 4.A.1.2.12 |
Gene ID: HRGMv2_2488_1_215
Type: TC
Location: 200975 - 202549 (+)
Type: TC
Location: 200975 - 202549 (+)
Gene ID: HRGMv2_2488_1_216
Type: pfam
Location: 203156 - 204211 (+)
Type: pfam
Location: 203156 - 204211 (+)
Gene ID: HRGMv2_2488_1_217
Type: TF
Location: 204529 - 205515 (-)
Type: TF
Location: 204529 - 205515 (-)
Gene ID: HRGMv2_2488_1_218
Type: CAZyme
Location: 205531 - 206988 (-)
Type: CAZyme
Location: 205531 - 206988 (-)
Gene ID: HRGMv2_2488_1_219
Type: TC
Location: 207199 - 209148 (+)
Type: TC
Location: 207199 - 209148 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus crispatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.