Genome Details
Selected Rep_genome_ID: HRGMv2_0556
Total Genomes Found: 5
Total Genomes Found: 5
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Brachyspirae
Order
Brachyspirales
Family
Brachyspiraceae
Genus
Brachyspira
Species
Brachyspira pilosicoli
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| BF051_22 | 2,676,202 | 98.4% | 0.8% | NA | Africa | H3AfricaPhase2 |
| CGMR020078 | 2,726,717 | 97.6% | 0% | China | Asia | CGMR |
| HRGMv2_0556 | 2,559,881 | 99.2% | 0% | Japan | Asia | HRGM |
| MGYG000000470 | 2,694,868 | 100% | 0% | Fiji | Oceania | UHGG |
| Rep_1342 | 2,762,176 | 99.2% | 0.8% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0556_CGC34 | CGCFAM_00012 | Yes | 7 | 3 | host glycan/beta-glucan |
| HRGMv2_0556_CGC16 | CGCFAM_00090 | Yes | 4 | 2 | |
| HRGMv2_0556_CGC25 | CGCFAM_00188 | Yes | 3 | 1 | |
| HRGMv2_0556_CGC23 | CGCFAM_00343 | Yes | 3 | 1 | |
| HRGMv2_0556_CGC22 | CGCFAM_00381 | Yes | 3 | 2 | |
| HRGMv2_0556_CGC24 | CGCFAM_00407 | Yes | 3 | 1 | |
| HRGMv2_0556_CGC4 | CGCFAM_00884 | Yes | 4 | 1 | |
| HRGMv2_0556_CGC3 | CGCFAM_02722 | Yes | 4 | 1 | |
| HRGMv2_0556_CGC5 | CGCFAM_03378 | Yes | 4 | 1 | |
| HRGMv2_0556_CGC14 | CGCFAM_03786 | Yes | 4 | 1 | |
| HRGMv2_0556_CGC29 | CGCFAM_05754 | Yes | 3 | 1 | |
| HRGMv2_0556_CGC10 | CGCFAM_09721 | Yes | 4 | 1 | |
| HRGMv2_0556_CGC13 | CGCFAM_09722 | Yes | 12 | 1 | |
| HRGMv2_0556_CGC15 | CGCFAM_09723 | Yes | 3 | 1 | |
| HRGMv2_0556_CGC28 | CGCFAM_09724 | Yes | 4 | 1 | |
| HRGMv2_0556_CGC33 | CGCFAM_09725 | Yes | 10 | 1 | |
| HRGMv2_0556_CGC35 | CGCFAM_09726 | Yes | 4 | 1 | |
| HRGMv2_0556_CGC38 | CGCFAM_09727 | Yes | 7 | 1 |
Top CAZyme Families