Cluster: HRGMv2_0556_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0556
- CGC Family ID: CGCFAM_02722
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0556_1 | HRGMv2_0556_1_143 | 162978 | 163775 | - | 3.A.1.7.5 |
| TC | HRGMv2_0556_1 | HRGMv2_0556_1_144 | 163799 | 165589 | - | 3.A.1.7.5 |
| pfam | HRGMv2_0556_1 | HRGMv2_0556_1_145 | 165671 | 166477 | - | PBP_like_2 |
| CAZyme | HRGMv2_0556_1 | HRGMv2_0556_1_146 | 166836 | 169028 | - | GH36 |
Gene ID: HRGMv2_0556_1_143
Type: TC
Location: 162978 - 163775 (-)
Type: TC
Location: 162978 - 163775 (-)
Gene ID: HRGMv2_0556_1_144
Type: TC
Location: 163799 - 165589 (-)
Type: TC
Location: 163799 - 165589 (-)
Gene ID: HRGMv2_0556_1_145
Type: pfam
Location: 165671 - 166477 (-)
Type: pfam
Location: 165671 - 166477 (-)
Gene ID: HRGMv2_0556_1_146
Type: CAZyme
Location: 166836 - 169028 (-)
Type: CAZyme
Location: 166836 - 169028 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Brachyspirae
Order
Brachyspirales
Family
Brachyspiraceae
Genus
Brachyspira
Species
Brachyspira pilosicoli
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.