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Cluster: HRGMv2_0556_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0556_6 HRGMv2_0556_6_46 46571 48181 - 3.A.1.5.1
pfam HRGMv2_0556_6 HRGMv2_0556_6_47 48503 49522 - PGA_cap
CAZyme HRGMv2_0556_6 HRGMv2_0556_6_48 49728 50906 + CBM50 | CBM50
pfam HRGMv2_0556_6 HRGMv2_0556_6_49 51240 52127 - DUF58 | VWA_2
TC HRGMv2_0556_6 HRGMv2_0556_6_50 52426 53247 - 3.D.6.1.2
TC HRGMv2_0556_6 HRGMv2_0556_6_51 53263 53841 - 3.D.6.1.4
TC HRGMv2_0556_6 HRGMv2_0556_6_52 53847 54494 - 3.D.6.1.2
Gene ID: HRGMv2_0556_6_46
Type: TC
Location: 46571 - 48181 (-)
Gene ID: HRGMv2_0556_6_47
Type: pfam
Location: 48503 - 49522 (-)
Gene ID: HRGMv2_0556_6_48
Type: CAZyme
Location: 49728 - 50906 (+)
Gene ID: HRGMv2_0556_6_49
Type: pfam
Location: 51240 - 52127 (-)
Gene ID: HRGMv2_0556_6_50
Type: TC
Location: 52426 - 53247 (-)
Gene ID: HRGMv2_0556_6_51
Type: TC
Location: 53263 - 53841 (-)
Gene ID: HRGMv2_0556_6_52
Type: TC
Location: 53847 - 54494 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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