Genome Details
Selected Rep_genome_ID: HRGMv2_0365
Total Genomes Found: 2
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes faecigallinarum
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_0365 | 2,359,393 | 94.8% | 0.721% | UK | Europe | HRGM |
| MGYG000003941 | 2,202,352 | 90.87% | 1.52% | United Kingdom | Europe | UHGG |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0365_CGC1 | CGCFAM_00001 | Yes | 4 | 1 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| HRGMv2_0365_CGC4 | CGCFAM_00006 | Yes | 9 | 5 | |
| HRGMv2_0365_CGC14 | CGCFAM_00075 | Yes | 4 | 2 | |
| HRGMv2_0365_CGC9 | CGCFAM_00081 | Yes | 11 | 1 | |
| HRGMv2_0365_CGC19 | CGCFAM_00128 | Yes | 11 | 5 | |
| HRGMv2_0365_CGC21 | CGCFAM_00479 | Yes | 6 | 2 | host glycan |
| HRGMv2_0365_CGC23 | CGCFAM_00607 | Yes | 9 | 1 | |
| HRGMv2_0365_CGC27 | CGCFAM_00697 | Yes | 7 | 2 | |
| HRGMv2_0365_CGC6 | CGCFAM_00715 | Yes | 4 | 1 | |
| HRGMv2_0365_CGC24 | CGCFAM_00734 | Yes | 5 | 1 | |
| HRGMv2_0365_CGC5 | CGCFAM_01655 | Yes | 5 | 1 | |
| HRGMv2_0365_CGC16 | CGCFAM_03998 | Yes | 17 | 8 | |
| HRGMv2_0365_CGC3 | CGCFAM_05401 | Yes | 3 | 1 | |
| HRGMv2_0365_CGC18 | CGCFAM_05517 | Yes | 7 | 1 | |
| HRGMv2_0365_CGC11 | CGCFAM_05992 | Yes | 6 | 2 | |
| HRGMv2_0365_CGC15 | CGCFAM_07381 | Yes | 4 | 1 | |
| HRGMv2_0365_CGC20 | CGCFAM_08897 | Yes | 4 | 1 |
Top CAZyme Families