Cluster: HRGMv2_0365_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_0365
- CGC Family ID: CGCFAM_00001
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0365_1 | HRGMv2_0365_1_153 | 184805 | 188002 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0365_1 | HRGMv2_0365_1_154 | 188016 | 189704 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0365_1 | HRGMv2_0365_1_155 | 189734 | 191581 | + | DUF5018 |
| CAZyme | HRGMv2_0365_1 | HRGMv2_0365_1_156 | 191696 | 193309 | + | GH20 |
Gene ID: HRGMv2_0365_1_153
Type: TC
Location: 184805 - 188002 (+)
Type: TC
Location: 184805 - 188002 (+)
Gene ID: HRGMv2_0365_1_154
Type: pfam
Location: 188016 - 189704 (+)
Type: pfam
Location: 188016 - 189704 (+)
Gene ID: HRGMv2_0365_1_155
Type: pfam
Location: 189734 - 191581 (+)
Type: pfam
Location: 189734 - 191581 (+)
Gene ID: HRGMv2_0365_1_156
Type: CAZyme
Location: 191696 - 193309 (+)
Type: CAZyme
Location: 191696 - 193309 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes faecigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.