Cluster: HRGMv2_0365_CGC16
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_0365
- CGC Family ID: CGCFAM_03998
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0365_9 | HRGMv2_0365_9_2 | 1826 | 3637 | - | GH2 |
| sulfatase | HRGMv2_0365_9 | HRGMv2_0365_9_3 | 3933 | 5264 | + | S1_71 |
| CAZyme | HRGMv2_0365_9 | HRGMv2_0365_9_4 | 5406 | 6437 | + | GH130_4 |
| pfam | HRGMv2_0365_9 | HRGMv2_0365_9_5 | 6478 | 8151 | + | GxGYxYP_C | GxGYxYP_N | GxGYxYP_N_2nd | GxGYxYP_N_3rd |
| TC | HRGMv2_0365_9 | HRGMv2_0365_9_6 | 8278 | 11307 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0365_9 | HRGMv2_0365_9_7 | 11329 | 13143 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0365_9 | HRGMv2_0365_9_8 | 13307 | 14026 | + | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | HRGMv2_0365_9 | HRGMv2_0365_9_9 | 14117 | 16069 | + | CE20 | CE20 |
| TF | HRGMv2_0365_9 | HRGMv2_0365_9_10 | 16137 | 20195 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_0365_9 | HRGMv2_0365_9_11 | 20303 | 21586 | + | 2.A.1.33.2 |
| pfam | HRGMv2_0365_9 | HRGMv2_0365_9_12 | 21863 | 23242 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | HRGMv2_0365_9 | HRGMv2_0365_9_13 | 23270 | 25438 | - | GH92 |
| CAZyme | HRGMv2_0365_9 | HRGMv2_0365_9_14 | 25449 | 27773 | - | GH92 |
| CAZyme | HRGMv2_0365_9 | HRGMv2_0365_9_15 | 27813 | 30167 | - | GH92 |
| CAZyme | HRGMv2_0365_9 | HRGMv2_0365_9_16 | 30177 | 32801 | - | GH38 |
| pfam | HRGMv2_0365_9 | HRGMv2_0365_9_17 | 32981 | 34600 | - | DUF6377 |
| CAZyme | HRGMv2_0365_9 | HRGMv2_0365_9_18 | 34888 | 36909 | + | GH2 |
Gene ID: HRGMv2_0365_9_2
Type: CAZyme
Location: 1826 - 3637 (-)
Type: CAZyme
Location: 1826 - 3637 (-)
Gene ID: HRGMv2_0365_9_3
Type: sulfatase
Location: 3933 - 5264 (+)
Type: sulfatase
Location: 3933 - 5264 (+)
Gene ID: HRGMv2_0365_9_4
Type: CAZyme
Location: 5406 - 6437 (+)
Type: CAZyme
Location: 5406 - 6437 (+)
Gene ID: HRGMv2_0365_9_5
Type: pfam
Location: 6478 - 8151 (+)
Type: pfam
Location: 6478 - 8151 (+)
Gene ID: HRGMv2_0365_9_6
Type: TC
Location: 8278 - 11307 (+)
Type: TC
Location: 8278 - 11307 (+)
Gene ID: HRGMv2_0365_9_7
Type: pfam
Location: 11329 - 13143 (+)
Type: pfam
Location: 11329 - 13143 (+)
Gene ID: HRGMv2_0365_9_8
Type: pfam
Location: 13307 - 14026 (+)
Type: pfam
Location: 13307 - 14026 (+)
Gene ID: HRGMv2_0365_9_9
Type: CAZyme
Location: 14117 - 16069 (+)
Type: CAZyme
Location: 14117 - 16069 (+)
Gene ID: HRGMv2_0365_9_10
Type: TF
Location: 16137 - 20195 (+)
Type: TF
Location: 16137 - 20195 (+)
Gene ID: HRGMv2_0365_9_11
Type: TC
Location: 20303 - 21586 (+)
Type: TC
Location: 20303 - 21586 (+)
Gene ID: HRGMv2_0365_9_12
Type: pfam
Location: 21863 - 23242 (-)
Type: pfam
Location: 21863 - 23242 (-)
Gene ID: HRGMv2_0365_9_13
Type: CAZyme
Location: 23270 - 25438 (-)
Type: CAZyme
Location: 23270 - 25438 (-)
Gene ID: HRGMv2_0365_9_14
Type: CAZyme
Location: 25449 - 27773 (-)
Type: CAZyme
Location: 25449 - 27773 (-)
Gene ID: HRGMv2_0365_9_15
Type: CAZyme
Location: 27813 - 30167 (-)
Type: CAZyme
Location: 27813 - 30167 (-)
Gene ID: HRGMv2_0365_9_16
Type: CAZyme
Location: 30177 - 32801 (-)
Type: CAZyme
Location: 30177 - 32801 (-)
Gene ID: HRGMv2_0365_9_17
Type: pfam
Location: 32981 - 34600 (-)
Type: pfam
Location: 32981 - 34600 (-)
Gene ID: HRGMv2_0365_9_18
Type: CAZyme
Location: 34888 - 36909 (+)
Type: CAZyme
Location: 34888 - 36909 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes faecigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0365_9_13 | vegetarian > vegan | 1.01569 | 0.01786 |
| HRGMv2_0365_9_14 | vegetarian > vegan | 1.22023 | 0.01786 |