Genome Details
Selected Rep_genome_ID: HRGMv2_0292
Total Genomes Found: 5
Total Genomes Found: 5
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Sodaliphilus
Species
Sodaliphilus sp934667475
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| BF074_36 | 2,156,113 | 90.55% | 1.65% | NA | Africa | H3AfricaPhase2 |
| CGMR016474 | 2,286,325 | 94.35% | 1.13% | China | Asia | CGMR |
| HRGMv2_0292 | 2,429,148 | 97.54% | 0.503% | Italy(Sardinia) | Europe | HRGM |
| REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Nepal_MoBio_Fiber-Hadza-Nepal_B_15_RAU0016YZ.115 | 2,324,446 | 93.77% | 0.5% | NA | Africa | Hadza |
| Rep_273 | 2,369,469 | 96.7814% | 0.503145% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0292_CGC25 | CGCFAM_00001 | Yes | 4 | 1 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| HRGMv2_0292_CGC28 | CGCFAM_00005 | Yes | 6 | 3 | |
| HRGMv2_0292_CGC8 | CGCFAM_00069 | Yes | 3 | 1 | |
| HRGMv2_0292_CGC11 | CGCFAM_00797 | Yes | 4 | 1 | |
| HRGMv2_0292_CGC4 | CGCFAM_01257 | Yes | 11 | 1 | |
| HRGMv2_0292_CGC1 | CGCFAM_01330 | Yes | 6 | 3 | |
| HRGMv2_0292_CGC17 | CGCFAM_01713 | Yes | 4 | 3 | |
| HRGMv2_0292_CGC7 | CGCFAM_01944 | Yes | 3 | 2 | |
| HRGMv2_0292_CGC2 | CGCFAM_03155 | Yes | 6 | 2 | |
| HRGMv2_0292_CGC3 | CGCFAM_03901 | Yes | 10 | 3 | |
| HRGMv2_0292_CGC9 | CGCFAM_05653 | Yes | 21 | 5 | |
| HRGMv2_0292_CGC20 | CGCFAM_06896 | Yes | 3 | 1 | |
| HRGMv2_0292_CGC5 | CGCFAM_06901 | Yes | 4 | 1 | |
| HRGMv2_0292_CGC10 | CGCFAM_07162 | Yes | 3 | 2 | |
| HRGMv2_0292_CGC13 | CGCFAM_09575 | Yes | 7 | 2 | |
| HRGMv2_0292_CGC14 | CGCFAM_09576 | Yes | 12 | 3 | |
| HRGMv2_0292_CGC6 | CGCFAM_09577 | Yes | 8 | 2 |
Top CAZyme Families