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Genome Details

Selected Rep_genome_ID: HRGMv2_0206
Total Genomes Found: 5
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→
Species
Alistipes avistercoris
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
C137.bin_22 2,703,525 100% 0.96% China(Inner Mongolia) Asia IMGG
HRGMv2_0206 2,572,167 100% 0.576% UK Europe HRGM
MGYG000004006 2,755,781 100% 0.96% United Kingdom Europe UHGG
Rep_630 2,875,389 96.6346% 0.961538% NA NA WIS
SW152_bin.3 2,603,573 97.68% 1.92% NA Africa H3AfricaPhase2
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
HRGMv2_0206_CGC23 CGCFAM_00001 Yes 5 2 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_0206_CGC41 CGCFAM_00017 Yes 6 2 fructan
HRGMv2_0206_CGC20 CGCFAM_00038 Yes 5 3
HRGMv2_0206_CGC1 CGCFAM_00075 Yes 3 1
HRGMv2_0206_CGC25 CGCFAM_00128 Yes 12 5
HRGMv2_0206_CGC34 CGCFAM_00173 Yes 7 1
HRGMv2_0206_CGC9 CGCFAM_00322 Yes 4 2
HRGMv2_0206_CGC4 CGCFAM_00459 Yes 3 1
HRGMv2_0206_CGC36 CGCFAM_00511 Yes 6 1
HRGMv2_0206_CGC38 CGCFAM_00536 Yes 4 1
HRGMv2_0206_CGC42 CGCFAM_00607 Yes 10 1
HRGMv2_0206_CGC7 CGCFAM_00715 Yes 4 1
HRGMv2_0206_CGC13 CGCFAM_00925 Yes 6 3 beta-glucan
HRGMv2_0206_CGC8 CGCFAM_01056 Yes 3 1
HRGMv2_0206_CGC27 CGCFAM_01657 Yes 4 1
HRGMv2_0206_CGC32 CGCFAM_01734 Yes 4 1
HRGMv2_0206_CGC12 CGCFAM_02118 Yes 4 1
HRGMv2_0206_CGC10 CGCFAM_02992 Yes 12 5
HRGMv2_0206_CGC40 CGCFAM_03093 Yes 4 1
HRGMv2_0206_CGC30 CGCFAM_03638 Yes 3 2
HRGMv2_0206_CGC11 CGCFAM_03936 Yes 11 1
HRGMv2_0206_CGC19 CGCFAM_05956 Yes 19 7
Top CAZyme Families