Cluster: HRGMv2_0206_CGC19
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_0206
- CGC Family ID: CGCFAM_05956
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0206_10 | HRGMv2_0206_10_9 | 12546 | 13661 | - | CBM32 |
| CAZyme | HRGMv2_0206_10 | HRGMv2_0206_10_10 | 13690 | 16035 | - | GH92 |
| CAZyme | HRGMv2_0206_10 | HRGMv2_0206_10_11 | 16049 | 18388 | - | GH92 |
| CAZyme | HRGMv2_0206_10 | HRGMv2_0206_10_12 | 18652 | 20592 | - | GH97 |
| CAZyme | HRGMv2_0206_10 | HRGMv2_0206_10_13 | 20667 | 22190 | - | GH125 |
| CAZyme | HRGMv2_0206_10 | HRGMv2_0206_10_14 | 22235 | 23425 | - | GH76 |
| pfam | HRGMv2_0206_10 | HRGMv2_0206_10_15 | 23462 | 24175 | - | Lipase_GDSL | Lipase_GDSL_2 |
| TF | HRGMv2_0206_10 | HRGMv2_0206_10_16 | 24466 | 28569 | + | HTH_AraC |
| CAZyme | HRGMv2_0206_10 | HRGMv2_0206_10_17 | 28810 | 30033 | - | GH76 |
| pfam | HRGMv2_0206_10 | HRGMv2_0206_10_18 | 30104 | 32242 | - | SusE | SusE |
| pfam | HRGMv2_0206_10 | HRGMv2_0206_10_19 | 32304 | 33458 | - | SusE |
| TC | HRGMv2_0206_10 | HRGMv2_0206_10_20 | 33486 | 35129 | - | 8.A.46.1.3 |
| TC | HRGMv2_0206_10 | HRGMv2_0206_10_21 | 35148 | 38270 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | HRGMv2_0206_10 | HRGMv2_0206_10_22 | 38508 | 39044 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0206_10 | HRGMv2_0206_10_23 | 39037 | 39492 | - | ATP-synt_C | ATP-synt_C |
| TC | HRGMv2_0206_10 | HRGMv2_0206_10_24 | 39513 | 41360 | - | 3.A.2.3.3 |
| pfam | HRGMv2_0206_10 | HRGMv2_0206_10_25 | 41357 | 41965 | - | ATP-synt_D |
| TC | HRGMv2_0206_10 | HRGMv2_0206_10_26 | 42133 | 43455 | - | 3.A.2.3.3 |
| TC | HRGMv2_0206_10 | HRGMv2_0206_10_27 | 43459 | 45213 | - | 3.A.2.3.3 |
Gene ID: HRGMv2_0206_10_9
Type: CAZyme
Location: 12546 - 13661 (-)
Type: CAZyme
Location: 12546 - 13661 (-)
Gene ID: HRGMv2_0206_10_10
Type: CAZyme
Location: 13690 - 16035 (-)
Type: CAZyme
Location: 13690 - 16035 (-)
Gene ID: HRGMv2_0206_10_11
Type: CAZyme
Location: 16049 - 18388 (-)
Type: CAZyme
Location: 16049 - 18388 (-)
Gene ID: HRGMv2_0206_10_12
Type: CAZyme
Location: 18652 - 20592 (-)
Type: CAZyme
Location: 18652 - 20592 (-)
Gene ID: HRGMv2_0206_10_13
Type: CAZyme
Location: 20667 - 22190 (-)
Type: CAZyme
Location: 20667 - 22190 (-)
Gene ID: HRGMv2_0206_10_14
Type: CAZyme
Location: 22235 - 23425 (-)
Type: CAZyme
Location: 22235 - 23425 (-)
Gene ID: HRGMv2_0206_10_15
Type: pfam
Location: 23462 - 24175 (-)
Type: pfam
Location: 23462 - 24175 (-)
Gene ID: HRGMv2_0206_10_16
Type: TF
Location: 24466 - 28569 (+)
Type: TF
Location: 24466 - 28569 (+)
Gene ID: HRGMv2_0206_10_17
Type: CAZyme
Location: 28810 - 30033 (-)
Type: CAZyme
Location: 28810 - 30033 (-)
Gene ID: HRGMv2_0206_10_18
Type: pfam
Location: 30104 - 32242 (-)
Type: pfam
Location: 30104 - 32242 (-)
Gene ID: HRGMv2_0206_10_19
Type: pfam
Location: 32304 - 33458 (-)
Type: pfam
Location: 32304 - 33458 (-)
Gene ID: HRGMv2_0206_10_20
Type: TC
Location: 33486 - 35129 (-)
Type: TC
Location: 33486 - 35129 (-)
Gene ID: HRGMv2_0206_10_21
Type: TC
Location: 35148 - 38270 (-)
Type: TC
Location: 35148 - 38270 (-)
Gene ID: HRGMv2_0206_10_22
Type:
Location: 38508 - 39044 (+)
Type:
Location: 38508 - 39044 (+)
Gene ID: HRGMv2_0206_10_23
Type: pfam
Location: 39037 - 39492 (-)
Type: pfam
Location: 39037 - 39492 (-)
Gene ID: HRGMv2_0206_10_24
Type: TC
Location: 39513 - 41360 (-)
Type: TC
Location: 39513 - 41360 (-)
Gene ID: HRGMv2_0206_10_25
Type: pfam
Location: 41357 - 41965 (-)
Type: pfam
Location: 41357 - 41965 (-)
Gene ID: HRGMv2_0206_10_26
Type: TC
Location: 42133 - 43455 (-)
Type: TC
Location: 42133 - 43455 (-)
Gene ID: HRGMv2_0206_10_27
Type: TC
Location: 43459 - 45213 (-)
Type: TC
Location: 43459 - 45213 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes avistercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0206_10_10 | vegetarian > vegan | 1.06392 | 0.00243 |
| HRGMv2_0206_10_20 | vegan > omnivore | 1.26248 | 0.00438 |
| HRGMv2_0206_10_21 | vegan > omnivore | 1.61533 | 0.00438 |