Cluster: HRGMv2_0206_CGC10
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0206
- CGC Family ID: CGCFAM_02992
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0206_3 | HRGMv2_0206_3_97 | 99268 | 100242 | - | GH43_31 |
| CAZyme | HRGMv2_0206_3 | HRGMv2_0206_3_98 | 100540 | 103065 | + | GH116 |
| CAZyme | HRGMv2_0206_3 | HRGMv2_0206_3_99 | 103411 | 104580 | - | GH172 |
| TF | HRGMv2_0206_3 | HRGMv2_0206_3_100 | 104664 | 105695 | - | LacI |
| TC | HRGMv2_0206_3 | HRGMv2_0206_3_101 | 106055 | 109168 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0206_3 | HRGMv2_0206_3_102 | 109189 | 111048 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0206_3 | HRGMv2_0206_3_103 | 111171 | 113153 | + | GH97 |
| sulfatase | HRGMv2_0206_3 | HRGMv2_0206_3_104 | 113179 | 114957 | + | S1_22 |
| pfam | HRGMv2_0206_3 | HRGMv2_0206_3_105 | 114973 | 116196 | + | DUF6786 |
| TC | HRGMv2_0206_3 | HRGMv2_0206_3_106 | 116208 | 117638 | + | 2.A.1.7.1 |
| pfam | HRGMv2_0206_3 | HRGMv2_0206_3_107 | 117646 | 119268 | + | FGGY_N | FGGY_C |
| CAZyme | HRGMv2_0206_3 | HRGMv2_0206_3_108 | 119244 | 120815 | + | GH183 |
Gene ID: HRGMv2_0206_3_97
Type: CAZyme
Location: 99268 - 100242 (-)
Type: CAZyme
Location: 99268 - 100242 (-)
Gene ID: HRGMv2_0206_3_98
Type: CAZyme
Location: 100540 - 103065 (+)
Type: CAZyme
Location: 100540 - 103065 (+)
Gene ID: HRGMv2_0206_3_99
Type: CAZyme
Location: 103411 - 104580 (-)
Type: CAZyme
Location: 103411 - 104580 (-)
Gene ID: HRGMv2_0206_3_100
Type: TF
Location: 104664 - 105695 (-)
Type: TF
Location: 104664 - 105695 (-)
Gene ID: HRGMv2_0206_3_101
Type: TC
Location: 106055 - 109168 (+)
Type: TC
Location: 106055 - 109168 (+)
Gene ID: HRGMv2_0206_3_102
Type: pfam
Location: 109189 - 111048 (+)
Type: pfam
Location: 109189 - 111048 (+)
Gene ID: HRGMv2_0206_3_103
Type: CAZyme
Location: 111171 - 113153 (+)
Type: CAZyme
Location: 111171 - 113153 (+)
Gene ID: HRGMv2_0206_3_104
Type: sulfatase
Location: 113179 - 114957 (+)
Type: sulfatase
Location: 113179 - 114957 (+)
Gene ID: HRGMv2_0206_3_105
Type: pfam
Location: 114973 - 116196 (+)
Type: pfam
Location: 114973 - 116196 (+)
Gene ID: HRGMv2_0206_3_106
Type: TC
Location: 116208 - 117638 (+)
Type: TC
Location: 116208 - 117638 (+)
Gene ID: HRGMv2_0206_3_107
Type: pfam
Location: 117646 - 119268 (+)
Type: pfam
Location: 117646 - 119268 (+)
Gene ID: HRGMv2_0206_3_108
Type: CAZyme
Location: 119244 - 120815 (+)
Type: CAZyme
Location: 119244 - 120815 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes avistercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.