Cluster: HRGMv2_0206_CGC36
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0206
- CGC Family ID: CGCFAM_00511
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0206_27 | HRGMv2_0206_27_30 | 32612 | 33760 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_0206_27 | HRGMv2_0206_27_31 | 33949 | 34587 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0206_27 | HRGMv2_0206_27_32 | 34591 | 35961 | - | 2.A.1.53.5 |
| STP | HRGMv2_0206_27 | HRGMv2_0206_27_33 | 35978 | 37966 | - | TPR_1 | TPR_1 | TPR_1 | TPR_1 | TPR_1 | TPR_1 |
| pfam | HRGMv2_0206_27 | HRGMv2_0206_27_34 | 38042 | 38923 | - | GTP_EFTU | Ras | MMR_HSR1 | FeoB_N | KH_2 | PduV-EutP |
| TC | HRGMv2_0206_27 | HRGMv2_0206_27_35 | 39167 | 40498 | - | 3.A.5.1.1 |
Gene ID: HRGMv2_0206_27_30
Type: CAZyme
Location: 32612 - 33760 (+)
Type: CAZyme
Location: 32612 - 33760 (+)
Gene ID: HRGMv2_0206_27_31
Type:
Location: 33949 - 34587 (-)
Type:
Location: 33949 - 34587 (-)
Gene ID: HRGMv2_0206_27_32
Type: TC
Location: 34591 - 35961 (-)
Type: TC
Location: 34591 - 35961 (-)
Gene ID: HRGMv2_0206_27_33
Type: STP
Location: 35978 - 37966 (-)
Type: STP
Location: 35978 - 37966 (-)
Gene ID: HRGMv2_0206_27_34
Type: pfam
Location: 38042 - 38923 (-)
Type: pfam
Location: 38042 - 38923 (-)
Gene ID: HRGMv2_0206_27_35
Type: TC
Location: 39167 - 40498 (-)
Type: TC
Location: 39167 - 40498 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes avistercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.