Genome Details
Selected Rep_genome_ID: CGMR061239
Total Genomes Found: 3
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus acidilactici
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| B171.bin_17 | 2,160,648 | 91.14% | 0% | China(Inner Mongolia) | Asia | IMGG |
| CGMR061239 | 1,842,387 | 95.68% | 0.71% | China | Asia | CGMR |
| GH117_bin.67 | 1,545,501 | 94.7% | 1.54% | NA | Africa | H3AfricaPhase2 |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| CGMR061239_CGC2 | CGCFAM_00064 | Yes | 7 | 3 | |
| CGMR061239_CGC27 | CGCFAM_00102 | Yes | 6 | 1 | |
| CGMR061239_CGC6 | CGCFAM_00255 | Yes | 7 | 2 | |
| CGMR061239_CGC12 | CGCFAM_00484 | Yes | 5 | 2 | galactan |
| CGMR061239_CGC24 | CGCFAM_00645 | Yes | 5 | 1 | |
| CGMR061239_CGC8 | CGCFAM_01680 | Yes | 24 | 6 | |
| CGMR061239_CGC18 | CGCFAM_01819 | Yes | 6 | 1 | galactan |
| PUL0561_CGMR061239_C0 | CGCFAM_01819 | Yes | 4 | 1 | galactan |
| CGMR061239_CGC10 | CGCFAM_02459 | Yes | 10 | 3 | |
| CGMR061239_CGC23 | CGCFAM_05689 | Yes | 12 | 2 | |
| CGMR061239_CGC7 | CGCFAM_05690 | Yes | 7 | 1 | |
| CGMR061239_CGC5 | CGCFAM_07262 | Yes | 9 | 1 | |
| CGMR061239_CGC25 | CGCFAM_08796 | Yes | 6 | 1 | |
| CGMR061239_CGC28 | CGCFAM_08797 | Yes | 3 | 1 | |
| CGMR061239_CGC29 | CGCFAM_08798 | Yes | 11 | 1 | |
| CGMR061239_CGC3 | CGCFAM_08799 | Yes | 4 | 1 |
Top CAZyme Families