Cluster: CGMR061239_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: galactan
- Genome ID: CGMR061239
- CGC Family ID: CGCFAM_01819
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_61278 | k141_61278_29 | 33854 | 34843 | + | 4.A.5.1.3 |
| TF | k141_61278 | k141_61278_30 | 35089 | 36084 | + | LacI |
| pfam | k141_61278 | k141_61278_31 | 36245 | 37273 | + | Aldose_epim |
| TC | k141_61278 | k141_61278_32 | 37694 | 39637 | + | 2.A.2.2.1 |
| pfam | k141_61278 | k141_61278_33 | 39850 | 40809 | - | Bgal_small_N |
| CAZyme | k141_61278 | k141_61278_34 | 40793 | 42673 | - | GH2 |
Gene ID: k141_61278_29
Type: TC
Location: 33854 - 34843 (+)
Type: TC
Location: 33854 - 34843 (+)
Gene ID: k141_61278_30
Type: TF
Location: 35089 - 36084 (+)
Type: TF
Location: 35089 - 36084 (+)
Gene ID: k141_61278_31
Type: pfam
Location: 36245 - 37273 (+)
Type: pfam
Location: 36245 - 37273 (+)
Gene ID: k141_61278_32
Type: TC
Location: 37694 - 39637 (+)
Type: TC
Location: 37694 - 39637 (+)
Gene ID: k141_61278_33
Type: pfam
Location: 39850 - 40809 (-)
Type: pfam
Location: 39850 - 40809 (-)
Gene ID: k141_61278_34
Type: CAZyme
Location: 40793 - 42673 (-)
Type: CAZyme
Location: 40793 - 42673 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus acidilactici
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.