Cluster: CGMR061239_CGC24
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR061239
- CGC Family ID: CGCFAM_00645
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_54592 | k141_54592_38 | 41138 | 42484 | - | 4.A.3.2.9 |
| CAZyme | k141_54592 | k141_54592_39 | 42509 | 43882 | - | GH1 |
| TF | k141_54592 | k141_54592_40 | 44037 | 44750 | + | GntR |
| pfam | k141_54592 | k141_54592_41 | 44855 | 45499 | - | DUF4767 |
| TC | k141_54592 | k141_54592_42 | 45632 | 48829 | - | 9.B.74.1.3 |
Gene ID: k141_54592_38
Type: TC
Location: 41138 - 42484 (-)
Type: TC
Location: 41138 - 42484 (-)
Gene ID: k141_54592_39
Type: CAZyme
Location: 42509 - 43882 (-)
Type: CAZyme
Location: 42509 - 43882 (-)
Gene ID: k141_54592_40
Type: TF
Location: 44037 - 44750 (+)
Type: TF
Location: 44037 - 44750 (+)
Gene ID: k141_54592_41
Type: pfam
Location: 44855 - 45499 (-)
Type: pfam
Location: 44855 - 45499 (-)
Gene ID: k141_54592_42
Type: TC
Location: 45632 - 48829 (-)
Type: TC
Location: 45632 - 48829 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus acidilactici
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.