y
Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g040787m |
Family | CBM43 |
Protein Properties | Length: 437 Molecular Weight: 47659.7 Isoelectric Point: 5.4424 |
Chromosome | Chromosome/Scaffold: 00002 Start: 2900227 End: 2901923 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 338 | 419 | 2.8e-31 |
WCVPKEGVTNKQLQANIDYACGRGIDCSPIAPGGACFEPDTLASHAAYAMNLHHQTNGRNAWDCDFSKTATLSSKDPSYKGC | |||
GH17 | 5 | 320 | 0 |
IGINYGNLGDNLPSPEDTVKLLQSTSIQKIRLYSPDIPMIKALANSGIDIVVGTQNSEIPALASDPNAAKTWINTNVLPFYPASNIFLIMVGNEISLDEN FRKQLLPAMQNMQNALDAGSLGGKIKVSTVHSMSVLSHSDPPSSGEFQTWLVDVMKGFLGFNNATGSPFAINPYPYYAYNSDPRPGYLAYCLFQVNAGRV DPNNNIKYMNMFDAQVDAARSALNSLGYNNVEIVVTETGWPSKGDDKEPWATIDKAKDYYSGLITHLRSKAGTPLMPGKTTDTYLFALYDENLKQGPISE RSFGLFKPDRTANFDV |
Full Sequence |
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Protein Sequence Length: 437 Download |
SEPFIGINYG NLGDNLPSPE DTVKLLQSTS IQKIRLYSPD IPMIKALANS GIDIVVGTQN 60 SEIPALASDP NAAKTWINTN VLPFYPASNI FLIMVGNEIS LDENFRKQLL PAMQNMQNAL 120 DAGSLGGKIK VSTVHSMSVL SHSDPPSSGE FQTWLVDVMK GFLGFNNATG SPFAINPYPY 180 YAYNSDPRPG YLAYCLFQVN AGRVDPNNNI KYMNMFDAQV DAARSALNSL GYNNVEIVVT 240 ETGWPSKGDD KEPWATIDKA KDYYSGLITH LRSKAGTPLM PGKTTDTYLF ALYDENLKQG 300 PISERSFGLF KPDRTANFDV GLLKNNKENP GAPNKAMWCV PKEGVTNKQL QANIDYACGR 360 GIDCSPIAPG GACFEPDTLA SHAAYAMNLH HQTNGRNAWD CDFSKTATLS SKDPSYKGCI 420 YPSNARESKD ELTNML* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 9.0e-5 | 234 | 314 | 85 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 4.0e-22 | 338 | 408 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 6.0e-39 | 338 | 421 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-91 | 5 | 320 | 316 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95331.1 | 0 | 1 | 422 | 20 | 452 | unknown [Populus trichocarpa] |
EMBL | CBI32582.1 | 0 | 1 | 422 | 55 | 488 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002282736.1 | 0 | 1 | 422 | 24 | 461 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002509479.1 | 0 | 1 | 422 | 24 | 456 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
RefSeq | XP_002510373.1 | 0 | 1 | 422 | 25 | 457 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 5 | 322 | 3 | 314 | A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant |
PDB | 3ur8_A | 0 | 5 | 322 | 3 | 314 | A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant |
PDB | 3ur7_B | 0 | 5 | 322 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 5 | 322 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 4gzj_A | 0 | 5 | 322 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO782823 | 435 | 12 | 421 | 0 |
HO781349 | 408 | 25 | 421 | 0 |
HO796302 | 414 | 19 | 421 | 0 |
DY293193 | 324 | 115 | 422 | 0 |
FQ415313 | 305 | 31 | 333 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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