y
Basic Information | |
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Species | Vitis vinifera |
Cazyme ID | GSVIVT01021412001 |
Family | CBM43 |
Protein Properties | Length: 181 Molecular Weight: 20124 Isoelectric Point: 5.876 |
Chromosome | Chromosome/Scaffold: 10 Start: 5067575 End: 5069538 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 95 | 176 | 3.2e-27 |
WCVAKPSSTYEELKDNIDFACSHVSCDIIRDGCPCSTPYTPINHASVVMNLYYQQMGRNQWNCDFRNSGLIAVTDPSYDGCQ |
Full Sequence |
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Protein Sequence Length: 181 Download |
MSDHQRPSHT FSPSFHIPLT VVAVENYTTL PSLSIYLFEH PFITQPTIVN FFTIVTQITA 60 MAAKSPSLPI LSIFLLLLFF NSGGTLMVAS GQKTWCVAKP SSTYEELKDN IDFACSHVSC 120 DIIRDGCPCS TPYTPINHAS VVMNLYYQQM GRNQWNCDFR NSGLIAVTDP SYDGCQYEYA 180 * 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 2.0e-16 | 94 | 163 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-29 | 94 | 177 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI30841.1 | 0 | 1 | 180 | 1 | 180 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_177973.4 | 5e-37 | 71 | 178 | 8 | 115 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002275460.1 | 0 | 61 | 180 | 1 | 120 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300444.1 | 6e-38 | 83 | 177 | 20 | 114 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002528491.1 | 2e-38 | 71 | 177 | 8 | 116 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 2e-20 | 94 | 177 | 12 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |