y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00066919m |
Family | CBM43 |
Protein Properties | Length: 131 Molecular Weight: 13685.5 Isoelectric Point: 6.9808 |
Chromosome | Chromosome/Scaffold: 020423 Start: 2715 End: 4142 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 43 | 121 | 1.2e-29 |
WCVAKPSAEAAALQGNLEFACSESDCGAIQGTGGCTRPDSLLSRASVAMNAYYQARGRNSWNCFFNGTGLITITDPSKQ |
Full Sequence |
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Protein Sequence Length: 131 Download |
MASSNVTMLA VCVALTLSGL YADVAEAVEQ PLRRSHRKAT KTWCVAKPSA EAAALQGNLE 60 FACSESDCGA IQGTGGCTRP DSLLSRASVA MNAYYQARGR NSWNCFFNGT GLITITDPSK 120 QAESGVPCCE * 180 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 1.0e-16 | 42 | 111 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 8.0e-30 | 42 | 119 | 79 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF84562.1 | 0 | 1 | 119 | 1 | 114 | unknown [Zea mays] |
GenBank | ACG25091.1 | 0 | 1 | 119 | 1 | 115 | glucan endo-1,3-beta-glucosidase precursor [Zea mays] |
RefSeq | NP_001060942.1 | 4.06377e-44 | 1 | 119 | 1 | 121 | Os08g0135500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001141170.1 | 0 | 1 | 119 | 1 | 115 | hypothetical protein LOC100273256 [Zea mays] |
RefSeq | XP_002443816.1 | 0 | 1 | 119 | 1 | 114 | hypothetical protein SORBIDRAFT_07g002710 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 3e-21 | 38 | 122 | 8 | 93 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |