y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si003126m |
Family | CBM43 |
Protein Properties | Length: 170 Molecular Weight: 18129.8 Isoelectric Point: 8.9118 |
Chromosome | Chromosome/Scaffold: 5 Start: 152271 End: 153197 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 86 | 166 | 3.6e-27 |
WCVAKPSASNDILSLNLNYACSQVSCAVIQKGGPCYYPDNFVSRAAVAMNLYNAANGRHPWNCYFNNSALVVQSDPSYGSC |
Full Sequence |
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Protein Sequence Length: 170 Download |
MAGCLGRKAE TRVCGFDWGR APRLIDLSPP FILPPQLQPP ATKMGIRGGR GAQPSASLLL 60 VSLTLVGLVL LSFTSSSSVE AQKKTWCVAK PSASNDILSL NLNYACSQVS CAVIQKGGPC 120 YYPDNFVSRA AVAMNLYNAA NGRHPWNCYF NNSALVVQSD PSYGSCTYY* 180 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 9.0e-14 | 85 | 154 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 9.0e-29 | 85 | 168 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF83843.1 | 0 | 83 | 169 | 30 | 116 | unknown [Zea mays] |
GenBank | ACG31507.1 | 0 | 83 | 169 | 30 | 116 | glucan endo-1,3-beta-glucosidase 4 precursor [Zea mays] |
GenBank | ACG36169.1 | 0 | 51 | 169 | 2 | 109 | glucan endo-1,3-beta-glucosidase 4 precursor [Zea mays] |
GenBank | ACG39487.1 | 0 | 73 | 169 | 24 | 122 | glucan endo-1,3-beta-glucosidase 4 precursor [Zea mays] |
RefSeq | XP_002454863.1 | 0 | 73 | 169 | 25 | 123 | hypothetical protein SORBIDRAFT_03g000270 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 2e-21 | 85 | 168 | 12 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CA260775 | 90 | 81 | 170 | 0 |
BE917786 | 90 | 81 | 170 | 0 |
BE357637 | 90 | 81 | 170 | 0 |
BE917868 | 90 | 81 | 170 | 0 |
CA125743 | 88 | 83 | 170 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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