y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10021619 |
Family | CBM43 |
Protein Properties | Length: 257 Molecular Weight: 27773.2 Isoelectric Point: 8.429 |
Chromosome | Chromosome/Scaffold: 208 Start: 1912 End: 5376 |
Description | plasmodesmata callose-binding protein 3 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 141 | 221 | 4e-30 |
WCVCKDMPDAVLQKALDYACGAGADCNPTRQNGQCFLPNTVRAHCSYAVNSYYQKKGQSQGSCDFSGAATISTSDPSVTGC |
Full Sequence |
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Protein Sequence Length: 257 Download |
MFHIVINYCT NLKLEGVKVS VPGKSPNTDR IHVQMSTGVS IVDTKIGTGD HYVFVGPGAA 60 NLCIENVSCG SGHDIRLTPP LLFPLSMPHL LNPKSHLFPN SSPQLPLNPR PIIACCHPKM 120 ALLLLIGMLM LAMAGNASCT WCVCKDMPDA VLQKALDYAC GAGADCNPTR QNGQCFLPNT 180 VRAHCSYAVN SYYQKKGQSQ GSCDFSGAAT ISTSDPSVTG CSYPATARYY FLFSNLSNSR 240 EREKLLILKL SSRYMF* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 6.0e-16 | 2 | 75 | 74 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02155 | PLN02155 | 4.0e-16 | 3 | 77 | 75 | + polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-18 | 2 | 75 | 74 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam07983 | X8 | 4.0e-21 | 140 | 210 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 5.0e-38 | 140 | 223 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK92735.1 | 0 | 123 | 226 | 3 | 106 | unknown [Populus trichocarpa] |
RefSeq | XP_002284112.1 | 5.60519e-45 | 120 | 226 | 1 | 107 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317963.1 | 0 | 135 | 228 | 15 | 108 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328640.1 | 0 | 123 | 230 | 3 | 110 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002514663.1 | 0 | 123 | 239 | 3 | 118 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 5e-19 | 137 | 225 | 9 | 98 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG216509 | 117 | 111 | 227 | 0 |
JG189303 | 88 | 140 | 227 | 0 |
JG160890 | 95 | 141 | 235 | 0 |
GW880125 | 89 | 138 | 226 | 1.4013e-45 |
CK642600 | 89 | 138 | 226 | 8.40779e-45 |
Sequence Alignments (This image is cropped. Click for full image.) |
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