y
Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g038452m |
Family | CBM43 |
Protein Properties | Length: 439 Molecular Weight: 47962.5 Isoelectric Point: 8.0573 |
Chromosome | Chromosome/Scaffold: 00021 Start: 1597900 End: 1600677 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 354 | 435 | 5.5e-31 |
CVPRPNTNPQSLQGNLDWVCSQGIDCAPIQPGGSCFEPNTLWSHAQYAMNAYYALKGRRDDNDCDFKQTALLTTNNPSYGSC | |||
GH17 | 28 | 331 | 0 |
IGVNYGTIANNLPKPAEVANFLKTKTTIDILRAFANTNISVTVSVGNGDIPALVQLPAAKNWVAANIVPFYPSTKIIRVVVGNEIMQSANKDWIYNLVPA MKSINNALIEAGIKDIKISTPNTLGFLGVSEPPSAGKFREGYDKDIIAPMLEFLRETKSAFMINPYPYFNYADSISDYILFKPNKGVYDPNTRITYSNMF DAQMDAVYSAMRALGYSDVPIVVAETGWPSAGDPRESSATVDNAASFNWNLIQKVNSGKGTPLMPNKQFETYIFALFNENKKPGATSERNFGLFKQDFTP VYDA |
Full Sequence |
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Protein Sequence Length: 439 Download |
MWSTRSSGLV VLQASLLILR FAATTSAIGV NYGTIANNLP KPAEVANFLK TKTTIDILRA 60 FANTNISVTV SVGNGDIPAL VQLPAAKNWV AANIVPFYPS TKIIRVVVGN EIMQSANKDW 120 IYNLVPAMKS INNALIEAGI KDIKISTPNT LGFLGVSEPP SAGKFREGYD KDIIAPMLEF 180 LRETKSAFMI NPYPYFNYAD SISDYILFKP NKGVYDPNTR ITYSNMFDAQ MDAVYSAMRA 240 LGYSDVPIVV AETGWPSAGD PRESSATVDN AASFNWNLIQ KVNSGKGTPL MPNKQFETYI 300 FALFNENKKP GATSERNFGL FKQDFTPVYD AGVMLNGAGA KTQPQPQPTD KKFCVPRPNT 360 NPQSLQGNLD WVCSQGIDCA PIQPGGSCFE PNTLWSHAQY AMNAYYALKG RRDDNDCDFK 420 QTALLTTNNP SYGSCVYA* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 4.0e-5 | 244 | 324 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 7.0e-18 | 354 | 423 | 75 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-37 | 352 | 437 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-86 | 28 | 330 | 318 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95730.1 | 0 | 18 | 437 | 19 | 447 | unknown [Populus trichocarpa] |
RefSeq | XP_002283647.1 | 0 | 1 | 437 | 3 | 445 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002312097.1 | 0 | 18 | 437 | 19 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002312098.1 | 0 | 24 | 437 | 26 | 453 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530862.1 | 0 | 22 | 431 | 22 | 439 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 28 | 330 | 1 | 309 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0 | 28 | 336 | 3 | 317 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_A | 0 | 28 | 336 | 3 | 317 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur7_B | 0 | 28 | 336 | 3 | 317 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 28 | 336 | 3 | 317 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |