y
Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g019362m |
Family | CBM43 |
Protein Properties | Length: 343 Molecular Weight: 36449.1 Isoelectric Point: 5.6223 |
Chromosome | Chromosome/Scaffold: 00250 Start: 153396 End: 158553 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 254 | 335 | 2e-33 |
WCVPKAGISDAQLQASLDYACSQGIDCSPIQPGGACFEPNTVVSHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGC | |||
GH17 | 5 | 221 | 0 |
DQNLISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGR VDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPAF ERSFGLFKPDLSAAYDV |
Full Sequence |
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Protein Sequence Length: 343 Download |
MISNDQNLIS QLLPAMANMQ NALNAASLGG KIKVSTVHAM SVLAQSDPPS SGSFIRQDTM 60 RGILQFLKDH GSPFTINPYP FFAYQSDPRP ETLAFCLFQP NAGRVDSGTG IKYMNMFDAQ 120 VDAVHSALNA MGFKDVEIVV AETGWPYRGD PNEVGPSVEN AKAYNGNLIA HLRSMAGTPL 180 MPGKSVDTYI FALYDEDLKP GPAFERSFGL FKPDLSAAYD VGISKSSQTP SAPVTPSTPK 240 TPTTPSPKPT AAGWCVPKAG ISDAQLQASL DYACSQGIDC SPIQPGGACF EPNTVVSHAA 300 FAMNLYYQTS AKNPWNCDFS KTATLTSQNP SYNGCVYPSG GT* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 7.0e-6 | 94 | 214 | 124 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 7.0e-23 | 254 | 324 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 6.0e-41 | 254 | 337 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-56 | 28 | 221 | 197 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95331.1 | 0 | 1 | 340 | 119 | 454 | unknown [Populus trichocarpa] |
GenBank | ABK95837.1 | 0 | 1 | 342 | 118 | 452 | unknown [Populus trichocarpa] |
EMBL | CAN61862.1 | 0 | 1 | 338 | 143 | 477 | hypothetical protein [Vitis vinifera] |
EMBL | CBI32582.1 | 0 | 1 | 338 | 154 | 488 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002509479.1 | 0 | 1 | 342 | 123 | 460 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 4.06377e-44 | 244 | 340 | 2 | 99 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 3ur8_B | 9.99967e-42 | 14 | 224 | 111 | 315 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 3ur8_A | 9.99967e-42 | 14 | 224 | 111 | 315 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 3ur7_B | 9.99967e-42 | 14 | 224 | 111 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 9.99967e-42 | 14 | 224 | 111 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY293193 | 312 | 27 | 338 | 0 |
FC916212 | 275 | 27 | 301 | 0 |
CX641734 | 266 | 27 | 292 | 0 |
CX044772 | 260 | 68 | 327 | 0 |
CX641734 | 30 | 285 | 313 | 0.012 |
Sequence Alignments (This image is cropped. Click for full image.) |
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