y
Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna12482.1-v1.0-hybrid |
Family | GH17 |
Protein Properties | Length: 578 Molecular Weight: 62384.1 Isoelectric Point: 4.6775 |
Chromosome | Chromosome/Scaffold: 1 Start: 6039066 End: 6041420 |
Description | beta-1,3-glucanase 5 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 29 | 337 | 0 |
IGVCYGTLGSDLPAPADVVNLYKQHGIAKMRIFNPNPAILDALRGSGIAVTIGIPNEDLENLATGQGAVDQWWNNNIAPYVNDVTINYIAIGNEVDPSVG LKNVLAVMPLLNNIQIVHDRIKVTTVLSSSVLASSYPPSIGEFTPEASSTMAGILAFLASTDSPLMINVYPYFAYKSDPGNVRLDYAQFTATETVVQDGE YGYVNLFDAIVDAFVAAMDKAGGATNVRVVVSESGWPSDGSGSITTPELAATYNKNLLNHILQKGGTPRRPGANIEGFIFAMFNENQKPAGEEQHFGLFY PNMQPGNDI |
Full Sequence |
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Protein Sequence Length: 578 Download |
MAVLGCIALI LCVIASFDNH AGRVGALDIG VCYGTLGSDL PAPADVVNLY KQHGIAKMRI 60 FNPNPAILDA LRGSGIAVTI GIPNEDLENL ATGQGAVDQW WNNNIAPYVN DVTINYIAIG 120 NEVDPSVGLK NVLAVMPLLN NIQIVHDRIK VTTVLSSSVL ASSYPPSIGE FTPEASSTMA 180 GILAFLASTD SPLMINVYPY FAYKSDPGNV RLDYAQFTAT ETVVQDGEYG YVNLFDAIVD 240 AFVAAMDKAG GATNVRVVVS ESGWPSDGSG SITTPELAAT YNKNLLNHIL QKGGTPRRPG 300 ANIEGFIFAM FNENQKPAGE EQHFGLFYPN MQPGNDIHAT TEVINLYKEY GIGKMRLFNP 360 DHAALEALRG TPYLYDTIFD YIVVGNEVIP GPLGKYVLPV MNSLPNILKD EGINPLTLTI 420 NVYLYSAYKS DFSHVPLAYA QFTSDKPVIQ NGNLKYYCLF DAIVDAFLAA MAKANNGHVR 480 VLVSESEINT DGLSKGNPSL AGCGGVFKDN FGRFIGGYYQ GLGTQIAFFA ELMAVILGVE 540 FAFHFGWHHI WLESDSTVTL QCLSSSSFVP PWPLRIA* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 1.0e-7 | 253 | 330 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
COG0328 | RnhA | 2.0e-8 | 487 | 556 | 70 | + Ribonuclease HI [DNA replication, recombination, and repair] | ||
cd06222 | RNase_H | 4.0e-16 | 489 | 571 | 83 | + RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. Ribonuclease H (RNase H) enzymes are divided into two major families, Type 1 and Type 2, based on amino acid sequence similarities and biochemical properties. RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner in the presence of divalent cations. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology, Type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site residues and have the same catalytic mechanism and functions in cells. RNase H is involved in DNA replication, repair and transcription. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-24 | 334 | 492 | 234 | + Glycosyl hydrolases family 17. | ||
pfam00332 | Glyco_hydro_17 | 8.0e-113 | 29 | 333 | 309 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 29 | 333 | 1 | 306 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 2cyg_A | 6e-19 | 334 | 517 | 9 | 266 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghr_A | 0 | 29 | 332 | 1 | 299 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghr_A | 0.00000000002 | 335 | 501 | 10 | 248 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1aq0_B | 0 | 29 | 332 | 1 | 299 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |