y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00057392m |
Family | GH17 |
Protein Properties | Length: 270 Molecular Weight: 28401.3 Isoelectric Point: 10.0086 |
Chromosome | Chromosome/Scaffold: 0292400 Start: 677 End: 1508 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 1 | 268 | 0 |
MRIYAPNTHVLDALRGSGIRLVLGVANEDLAGLASNRASAASPTTPSVNIAYIAVGNEVQGGATRSILPVMRNLAAALAAAGLAGVKVSTCVRLDVVTNS FPPSGGVFAQPCVAEIARSLATTGAPLLANVYPYFAYKEDPRSISLSYATFRPGTTVRDGGNGLVYTNLLDAIYAALEKAGAPNVRVVVSETGWPSAGGF AATVDNARRYNQAAIDHVRRGTPKRPGVQLETYVFAMFNEKQKPGEPTEKSFGLFHPNTSSAVYRIKF |
Full Sequence |
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Protein Sequence Length: 270 Download |
MRIYAPNTHV LDALRGSGIR LVLGVANEDL AGLASNRASA ASPTTPSVNI AYIAVGNEVQ 60 GGATRSILPV MRNLAAALAA AGLAGVKVST CVRLDVVTNS FPPSGGVFAQ PCVAEIARSL 120 ATTGAPLLAN VYPYFAYKED PRSISLSYAT FRPGTTVRDG GNGLVYTNLL DAIYAALEKA 180 GAPNVRVVVS ETGWPSAGGF AATVDNARRY NQAAIDHVRR GTPKRPGVQL ETYVFAMFNE 240 KQKPGEPTEK SFGLFHPNTS SAVYRIKFR* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.0006 | 10 | 255 | 256 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam00332 | Glyco_hydro_17 | 6.0e-113 | 1 | 268 | 284 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL35900.1 | 0 | 1 | 268 | 59 | 334 | AF443600_1 endo-1,3-beta-glucanase [Oryza sativa] |
GenBank | AAY88778.1 | 0 | 1 | 268 | 58 | 334 | beta-1,3-glucanase [Triticum aestivum] |
GenBank | AAY96422.1 | 0 | 1 | 268 | 58 | 334 | beta-1,3-glucanase [Triticum aestivum] |
GenBank | EAY77183.1 | 0 | 1 | 268 | 59 | 334 | hypothetical protein OsI_05153 [Oryza sativa Indica Group] |
RefSeq | NP_001045372.1 | 0 | 1 | 268 | 59 | 334 | Os01g0944700 [Oryza sativa (japonica cultivar-group)] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghs_B | 0 | 1 | 268 | 30 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 1 | 268 | 30 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_D | 0 | 1 | 268 | 31 | 315 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_C | 0 | 1 | 268 | 31 | 315 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_B | 0 | 1 | 268 | 31 | 315 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DR739897 | 274 | 1 | 262 | 0 |
HX143290 | 232 | 43 | 270 | 0 |
HX129177 | 229 | 46 | 270 | 0 |
DR739798 | 267 | 1 | 255 | 0 |
HX177439 | 229 | 46 | 270 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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