y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si010016m |
Family | GT47 |
Protein Properties | Length: 473 Molecular Weight: 52295.5 Isoelectric Point: 9.6839 |
Chromosome | Chromosome/Scaffold: 7 Start: 34474415 End: 34477369 |
Description | exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 97 | 409 | 0 |
AVRVFMYDMPPEFHFGLLGWSPPSPDSVWPDLSTPPPRYPGGLNQQHSVEYWLTLDLLSSSSAPCGPAVRVADSRDADLVFVPFFASLSYNRHSRPVPPE KVARDKALQEKLVRYLSARPEWKRYGGADHVIVAHHPNSLLHARGPLSPAVFVLSDFGRYHPRVASLEKDVIAPYKHMAKTFVNDLAGFDDRPTLLYFRG AIYRKEGGSIRQELYYMLKDEKNVYFSFGSVQDHGASKASQGMHSSKFCLNIAGDTPSSNRLFDAIVSHCVPVIISDDIELPYEDVLDYSKFSIFVRSSD AVKKGFLMRLISG |
Full Sequence |
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Protein Sequence Length: 473 Download |
MAPRGRTLLL PLAAATVLVA STIFLFAAAG ARWRPADTGL PVPPHAFSAA AVPVTATASS 60 NTTTGGRKEL SFLDENGRPD DPGSSSGSAG CDPRGAAVRV FMYDMPPEFH FGLLGWSPPS 120 PDSVWPDLST PPPRYPGGLN QQHSVEYWLT LDLLSSSSAP CGPAVRVADS RDADLVFVPF 180 FASLSYNRHS RPVPPEKVAR DKALQEKLVR YLSARPEWKR YGGADHVIVA HHPNSLLHAR 240 GPLSPAVFVL SDFGRYHPRV ASLEKDVIAP YKHMAKTFVN DLAGFDDRPT LLYFRGAIYR 300 KEGGSIRQEL YYMLKDEKNV YFSFGSVQDH GASKASQGMH SSKFCLNIAG DTPSSNRLFD 360 AIVSHCVPVI ISDDIELPYE DVLDYSKFSI FVRSSDAVKK GFLMRLISGV SKQQWTRMWN 420 RLKEVDKHFE YQYPSQKDDA VQMIWQALAR RVPAIQLKVH RSSRFSRSGR GK* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 1.0e-58 | 94 | 399 | 316 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA91286.2 | 0 | 1 | 471 | 1 | 474 | secondary cell wall-related glycosyltransferase family 47, putative, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | EEC67582.1 | 0 | 1 | 471 | 1 | 481 | hypothetical protein OsI_34941 [Oryza sativa Indica Group] |
GenBank | EEE52679.1 | 0 | 43 | 472 | 96 | 528 | hypothetical protein OsJ_35064 [Oryza sativa Japonica Group] |
RefSeq | NP_001066040.1 | 0 | 1 | 472 | 1 | 475 | Os12g0124400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151894.1 | 0 | 1 | 472 | 1 | 488 | secondary cell wall-related glycosyltransferase family 47 [Zea mays] |