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Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra038288 |
Family | GT47 |
Protein Properties | Length: 470 Molecular Weight: 53932.6 Isoelectric Point: 9.2668 |
Chromosome | Chromosome/Scaffold: 06 Start: 11463189 End: 11464674 |
Description | exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 77 | 391 | 0 |
LKVFMYDMDPEFHFGLLNWKPERKSVWPDVHKFIPPYPGGLNLQHSIEYWLTLDLLASEYPNGARPIAAKRVYNSTDADVIFVPFFSSLSYNRFSKVNPH QKTSRNKDLQGKLVAFLTAQEEWKRSGGRDHVVLAHHPNSMLDARNKLFPAMFILSDFGRYPPTVANVEKDVIAPYKHVIKTYENDSSGFDSRPILLYFQ GAIYRKDGGFVRQELFYLLQDEKDVHFSFGSVRNGGINKASQGMHNSKFCLNIAGDTPSFNRLFDAIASHCVPVIISDDIELPFEDVIDYSEFSVFVRTS DALKDNFLVNLIRGI |
Full Sequence |
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Protein Sequence Length: 470 Download |
MPEKNGSTIG YVARNLLLCL FVFTTVLFAL SCYFVLRSTA HNRFLGSTFQ SKSFVRDPGA 60 KKDDCRCVED EKRTGPLKVF MYDMDPEFHF GLLNWKPERK SVWPDVHKFI PPYPGGLNLQ 120 HSIEYWLTLD LLASEYPNGA RPIAAKRVYN STDADVIFVP FFSSLSYNRF SKVNPHQKTS 180 RNKDLQGKLV AFLTAQEEWK RSGGRDHVVL AHHPNSMLDA RNKLFPAMFI LSDFGRYPPT 240 VANVEKDVIA PYKHVIKTYE NDSSGFDSRP ILLYFQGAIY RKDGGFVRQE LFYLLQDEKD 300 VHFSFGSVRN GGINKASQGM HNSKFCLNIA GDTPSFNRLF DAIASHCVPV IISDDIELPF 360 EDVIDYSEFS VFVRTSDALK DNFLVNLIRG ITKEEWTRMW NRLKEVEKFY EFHFPSRVDD 420 AVQMIWQAIA RKVPGVKMRI HKSRRYSAGS VSDAGKESRW SSLIPRSFW* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 1.0e-54 | 76 | 391 | 326 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN68950.1 | 0 | 1 | 469 | 1 | 488 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_190126.1 | 0 | 1 | 469 | 3 | 475 | exostosin family protein [Arabidopsis thaliana] |
RefSeq | XP_002268382.1 | 0 | 1 | 469 | 1 | 488 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319201.1 | 0 | 1 | 447 | 3 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530948.1 | 0 | 64 | 447 | 96 | 480 | catalytic, putative [Ricinus communis] |