y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra036746 |
Family | GT47 |
Protein Properties | Length: 480 Molecular Weight: 54392.2 Isoelectric Point: 8.9577 |
Chromosome | Chromosome/Scaffold: 08 Start: 7380499 End: 7382173 |
Description | Exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 55 | 403 | 0 |
TGINVFVAELPRSLNYGLLDKYWSSSPDSRIPSDPDHPTRKTNSPKPEKYPPYPENPLIKQYSAEYWIMGDLETPPEKRTGSFAKRVFSESEADVVFVPF FATLSAEMELGNGKGSSFRKKSGNEDYQRQRQVLDFLKNTQAWKRSGGRDHVFVLTDPVAMWHVREEIALSILLVVDFGGWFRQDSKSFNGTSFPERIEH TQVSVIKDVIVPYTHLLPRLDLSQNKRRHSLLYFKGAKHRHRGGLIREKLWDLLVDEHGIVMEEGFPNATGREQSIRGMRSSEFCLHPAGDTPTSCRLFD AIQSLCIPVIVSDNIELPFEGMIDYSEFSVFVSVSDALRPKWLANHLRN |
Full Sequence |
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Protein Sequence Length: 480 Download |
MVPKITSMAV AKPLCSVSCL LLSSSLVFVV SLLFFFSNSL TSDQNPRISL DTFHTGINVF 60 VAELPRSLNY GLLDKYWSSS PDSRIPSDPD HPTRKTNSPK PEKYPPYPEN PLIKQYSAEY 120 WIMGDLETPP EKRTGSFAKR VFSESEADVV FVPFFATLSA EMELGNGKGS SFRKKSGNED 180 YQRQRQVLDF LKNTQAWKRS GGRDHVFVLT DPVAMWHVRE EIALSILLVV DFGGWFRQDS 240 KSFNGTSFPE RIEHTQVSVI KDVIVPYTHL LPRLDLSQNK RRHSLLYFKG AKHRHRGGLI 300 REKLWDLLVD EHGIVMEEGF PNATGREQSI RGMRSSEFCL HPAGDTPTSC RLFDAIQSLC 360 IPVIVSDNIE LPFEGMIDYS EFSVFVSVSD ALRPKWLANH LRNFSERDKE TFRSRMAKVQ 420 SVFVYDNGKA DGIGPIQPDG AVNHIWKKVQ QKVPMVKEAV FRERRKPAGT SVPLRCQCI* 480 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 1.0e-56 | 111 | 404 | 306 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_564443.1 | 0 | 1 | 479 | 1 | 477 | exostosin family protein [Arabidopsis thaliana] |
RefSeq | XP_002270238.1 | 0 | 14 | 478 | 16 | 439 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002325567.1 | 0 | 15 | 478 | 13 | 475 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002327326.1 | 0 | 33 | 478 | 5 | 448 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002533317.1 | 0 | 57 | 478 | 55 | 477 | catalytic, putative [Ricinus communis] |