y
Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s307_10V6.1 |
Family | GT47 |
Protein Properties | Length: 461 Molecular Weight: 52890.9 Isoelectric Point: 9.7401 |
Chromosome | Chromosome/Scaffold: 307 Start: 71513 End: 75620 |
Description | Exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 67 | 399 | 0 |
LKIYMYELPRKFNMGMLKKDKNQEIPWTNHVAPPWKQKFEVNKQHSVEYWLMVYLLDGWDRKDGKTAAVRVIDPEQADVFFVPFFSALSFNSHGHGMSEG AAADKRLQIVLLTFGRHVNASCHLVQAGLVDILSKSKWWQASQGRDHILVAHHPNALRHYRDMLNQSIFIVADFGRYDKTVARLSKDVVAPYVHVLPSYD QDNPADPFSLRKTLLFFQGRIHRKGDGIVRTKLAELLANNSDVHYVDSLASAEAIATSTAGMRTSRFCLHPAGDTPSSCRLFDAIVSHCVPVIISDRIEL PFEDDLNYKDFSIFFSSEESVKPGHLLRTLRSI |
Full Sequence |
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Protein Sequence Length: 461 Download |
MMVKSSRKPA CWVLFGLFIA FILALPAYIS PDSMIQNGHM NDKTFNWFRW SPRSKLDDST 60 GSYSCPLKIY MYELPRKFNM GMLKKDKNQE IPWTNHVAPP WKQKFEVNKQ HSVEYWLMVY 120 LLDGWDRKDG KTAAVRVIDP EQADVFFVPF FSALSFNSHG HGMSEGAAAD KRLQIVLLTF 180 GRHVNASCHL VQAGLVDILS KSKWWQASQG RDHILVAHHP NALRHYRDML NQSIFIVADF 240 GRYDKTVARL SKDVVAPYVH VLPSYDQDNP ADPFSLRKTL LFFQGRIHRK GDGIVRTKLA 300 ELLANNSDVH YVDSLASAEA IATSTAGMRT SRFCLHPAGD TPSSCRLFDA IVSHCVPVII 360 SDRIELPFED DLNYKDFSIF FSSEESVKPG HLLRTLRSIT RERWLRMWNA LKTVSHHFEY 420 QHPPKKDDAV NMIFKQVQHK VPALKLAIHR SQRLRIPDWV * 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 3.0e-67 | 66 | 399 | 342 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK24530.1 | 0 | 61 | 459 | 56 | 442 | unknown [Picea sitchensis] |
RefSeq | XP_001754933.1 | 0 | 71 | 459 | 1 | 373 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001778357.1 | 0 | 62 | 459 | 26 | 406 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001781620.1 | 0 | 1 | 460 | 1 | 460 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002512333.1 | 0 | 66 | 459 | 55 | 430 | catalytic, putative [Ricinus communis] |