y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.007G252800.1 |
Family | GT47 |
Protein Properties | Length: 498 Molecular Weight: 57082.4 Isoelectric Point: 9.11 |
Chromosome | Chromosome/Scaffold: 07 Start: 40449981 End: 40452218 |
Description | exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 104 | 420 | 0 |
EPLKIFMYDLDPEFHFGLLDWKPQGDRIWPDIRTEIPPYPEGLNLQHSIEYWLTLDLLASEISDNPNNRVAMRVQNSSEADLIFVPFFSSLSYNRFSKQN PHQKKSVNKVLQAKLVKFLTAQKEWKMSGGRDHIVMAHHPNSMLDARMQLWPSIFILADFGRYPLNIANVDKDVIAPYKHMVESYANDTSDFDSRQTLLF FQGSIYRKDGGFARQELFYLLKDEKDVHFAFGSLKNNGVIKAGQGMRLSKFCLNIAGDTPSSNRLFDAIASHCVPVIISDDIELPYEDILDYSEFCVFVR TSDAVKENFLINLIRSI |
Full Sequence |
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Protein Sequence Length: 498 Download |
MAEKQSSSAA RKSFFALFLT TIVLFVLSWL FVLRLTGRPR PLDRKVLTTQ KLPTFFHHVK 60 SQSSNGLSRA ILVNNGGREE EPPKREQGFQ DKDGAMNCNG NVKEPLKIFM YDLDPEFHFG 120 LLDWKPQGDR IWPDIRTEIP PYPEGLNLQH SIEYWLTLDL LASEISDNPN NRVAMRVQNS 180 SEADLIFVPF FSSLSYNRFS KQNPHQKKSV NKVLQAKLVK FLTAQKEWKM SGGRDHIVMA 240 HHPNSMLDAR MQLWPSIFIL ADFGRYPLNI ANVDKDVIAP YKHMVESYAN DTSDFDSRQT 300 LLFFQGSIYR KDGGFARQEL FYLLKDEKDV HFAFGSLKNN GVIKAGQGMR LSKFCLNIAG 360 DTPSSNRLFD AIASHCVPVI ISDDIELPYE DILDYSEFCV FVRTSDAVKE NFLINLIRSI 420 RKEEWTQMWE KLKEVETLFE YQYPAKDGDA VQMIWQSLAR KVPGVKMKIN KSRRYSDAVV 480 PGKDGGLRSI PAPKNFW* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 6.0e-53 | 103 | 420 | 328 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33321.1 | 0 | 1 | 497 | 1 | 509 | secondary cell wall-related glycosyltransferase family 47 [Populus tremula x Populus tremuloides] |
RefSeq | XP_002268382.1 | 0 | 34 | 497 | 37 | 488 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319201.1 | 0 | 1 | 476 | 3 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002325457.1 | 0 | 93 | 497 | 59 | 463 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530948.1 | 0 | 1 | 493 | 1 | 496 | catalytic, putative [Ricinus communis] |