y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.013G196700.1 |
Family | GT47 |
Protein Properties | Length: 485 Molecular Weight: 55712.7 Isoelectric Point: 10.0263 |
Chromosome | Chromosome/Scaffold: 13 Start: 50129301 End: 50132196 |
Description | exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 98 | 413 | 0 |
PLKIFLYDLDPEFHFGLLDWKPQGNSVWPDIRTKIPSYPGGLNSQHSIEYWLTLDLLASEFSENPSSREAIRVKNSSEADLIFVPFFSSLSYNRYSKLSP HQKKSKNWELQEKLVKFVMSQKEWKISGGRNHVVLAHHPNSMLNARMQLWPAIFILSDFGRYPINVANLDKDVIAPYKHVIKSYVNDSSDFDSRKTLLYF QGAIYRKNGGFARQELYYLLKDEKDVHFSFGSVQRNGIRQASQGMHSSKFCLNIAGDTPSSNRLFDAIASHCVPVIISDEIELPYEDILDYTEFCIFIRT SDAVKKGFLINRIRSI |
Full Sequence |
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Protein Sequence Length: 485 Download |
MAEKRGSSIT KIAFLCLFMT TTMMFVLSLR GRPGLFDHKT RPAEKLLTVF NNGDSQTSNQ 60 SNAESSNGSN RAILANSEKQ RVEEGGFQVS CNGNLKEPLK IFLYDLDPEF HFGLLDWKPQ 120 GNSVWPDIRT KIPSYPGGLN SQHSIEYWLT LDLLASEFSE NPSSREAIRV KNSSEADLIF 180 VPFFSSLSYN RYSKLSPHQK KSKNWELQEK LVKFVMSQKE WKISGGRNHV VLAHHPNSML 240 NARMQLWPAI FILSDFGRYP INVANLDKDV IAPYKHVIKS YVNDSSDFDS RKTLLYFQGA 300 IYRKNGGFAR QELYYLLKDE KDVHFSFGSV QRNGIRQASQ GMHSSKFCLN IAGDTPSSNR 360 LFDAIASHCV PVIISDEIEL PYEDILDYTE FCIFIRTSDA VKKGFLINRI RSITKDKWTQ 420 MWEKLKQVEP LFEFQYPSKE GDAIQMIWQS LSHKVSSVKM KINKSKRYSR FVPRKRRGLR 480 TRTK* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 1.0e-55 | 95 | 413 | 329 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33321.1 | 0 | 31 | 480 | 41 | 500 | secondary cell wall-related glycosyltransferase family 47 [Populus tremula x Populus tremuloides] |
EMBL | CAN68950.1 | 0 | 31 | 481 | 40 | 480 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002268382.1 | 0 | 31 | 470 | 40 | 469 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319201.1 | 0 | 1 | 469 | 3 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530948.1 | 0 | 31 | 480 | 40 | 491 | catalytic, putative [Ricinus communis] |