y
Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr3g116510.2 |
Family | CBM43 |
Protein Properties | Length: 460 Molecular Weight: 48704.7 Isoelectric Point: 4.5805 |
Chromosome | Chromosome/Scaffold: 3 Start: 42057791 End: 42062507 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 371 | 453 | 3.2e-32 |
WCVPKAGVSDAQLQNNIDYACSQGIDCGPILPGGACFEPNTVASHAAFVMNLYYQTFGRNQWNCDFTQTAKLTSQNPSYNACN | |||
GH17 | 28 | 345 | 0 |
VGVNYGQTADNLPPPEATAKLLQSTTIGKVRIYGADPAIIKSLANSGIGIVIGAANNDIPSLASDPNAATQWINTNVLPYYPASNITLITVGNEVLNSGD EGLVSQLMPAIRNVQTALSSVKLGGKVKVTTVHSMAVLAQSDPPSSGSFNPALRNTLNQLLAFLKDNKSPFTVNPYPFFAYQSDPRPETLTFCLFQPNSG RVDSGNGKLYTNMFDAQVDAVHSALSAMSYEDIEIVVAETGWPSSGDNNEVGPSVENAKAYNGNLITHLRSLVGTPLIPGKSVDTYIFALYDEDLKPGPG SERAFGLFKTDLSMSYDI |
Full Sequence |
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Protein Sequence Length: 460 Download |
MSPPTPSFLL FFSLFAIALS FADSQSFVGV NYGQTADNLP PPEATAKLLQ STTIGKVRIY 60 GADPAIIKSL ANSGIGIVIG AANNDIPSLA SDPNAATQWI NTNVLPYYPA SNITLITVGN 120 EVLNSGDEGL VSQLMPAIRN VQTALSSVKL GGKVKVTTVH SMAVLAQSDP PSSGSFNPAL 180 RNTLNQLLAF LKDNKSPFTV NPYPFFAYQS DPRPETLTFC LFQPNSGRVD SGNGKLYTNM 240 FDAQVDAVHS ALSAMSYEDI EIVVAETGWP SSGDNNEVGP SVENAKAYNG NLITHLRSLV 300 GTPLIPGKSV DTYIFALYDE DLKPGPGSER AFGLFKTDLS MSYDIGLAKS SQQNPPSTSP 360 VTPAPITSAG WCVPKAGVSD AQLQNNIDYA CSQGIDCGPI LPGGACFEPN TVASHAAFVM 420 NLYYQTFGRN QWNCDFTQTA KLTSQNPSYN ACNYAGGST* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 2.0e-9 | 26 | 338 | 326 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 7.0e-22 | 371 | 440 | 75 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-38 | 371 | 454 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-87 | 28 | 345 | 318 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95331.1 | 0 | 7 | 458 | 4 | 455 | unknown [Populus trichocarpa] |
GenBank | ACJ84511.1 | 0 | 1 | 407 | 1 | 407 | unknown [Medicago truncatula] |
EMBL | CBI32582.1 | 0 | 23 | 456 | 54 | 489 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002284340.1 | 0 | 23 | 456 | 54 | 489 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002509479.1 | 0 | 21 | 459 | 21 | 460 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 28 | 345 | 1 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 28 | 348 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0 | 28 | 348 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_B | 0 | 28 | 348 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_A | 0 | 28 | 348 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |