Genome Details
Selected Rep_genome_ID: Rep_816
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhizobiales
Family
Xanthobacteraceae
Genus
Afipia
Species
Afipia broomeae
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| Rep_816 | 5,238,503 | 97.5285% | 1.57822% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_816_CGC7 | CGCFAM_00007 | Yes | 5 | 2 | |
| Rep_816_CGC28 | CGCFAM_00013 | Yes | 6 | 1 | |
| Rep_816_CGC27 | CGCFAM_00124 | Yes | 4 | 1 | |
| Rep_816_CGC20 | CGCFAM_01353 | Yes | 12 | 4 | |
| Rep_816_CGC21 | CGCFAM_01457 | Yes | 3 | 1 | |
| Rep_816_CGC5 | CGCFAM_01457 | Yes | 9 | 1 | |
| Rep_816_CGC3 | CGCFAM_02524 | Yes | 4 | 1 | |
| Rep_816_CGC12 | CGCFAM_02884 | Yes | 3 | 1 | |
| Rep_816_CGC11 | CGCFAM_03890 | Yes | 5 | 1 | |
| Rep_816_CGC22 | CGCFAM_04100 | Yes | 4 | 2 | |
| Rep_816_CGC29 | CGCFAM_05842 | Yes | 7 | 1 | |
| Rep_816_CGC24 | CGCFAM_06340 | Yes | 6 | 1 | |
| Rep_816_CGC1 | CGCFAM_06341 | Yes | 11 | 3 | |
| Rep_816_CGC19 | CGCFAM_08961 | Yes | 8 | 2 | |
| Rep_816_CGC25 | CGCFAM_09196 | Yes | 4 | 1 | |
| Rep_816_CGC30 | CGCFAM_10916 | Yes | 5 | 1 | |
| Rep_816_CGC23 | CGCFAM_10977 | Yes | 5 | 1 |
Top CAZyme Families