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Cluster: Rep_816_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_816_c_7 Rep_816_c_7_49 47628 50066 - 3.A.7.4.2
pfam Rep_816_c_7 Rep_816_c_7_50 50081 50362 - VirB3
TC Rep_816_c_7 Rep_816_c_7_51 50362 50694 - 3.A.7.4.2
TC Rep_816_c_7 Rep_816_c_7_52 50691 51659 - 3.A.7.4.2
pfam Rep_816_c_7 Rep_816_c_7_53 51875 52354 + AHSA1
NULL(UNKNOWN) Rep_816_c_7 Rep_816_c_7_54 52390 52821 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_816_c_7 Rep_816_c_7_55 52828 54810 - 3.A.7.4.2
pfam Rep_816_c_7 Rep_816_c_7_56 54836 56575 - Relaxase | DUF3363 | DUF3363
CAZyme Rep_816_c_7 Rep_816_c_7_57 56820 57593 - GH23
Gene ID: Rep_816_c_7_49
Type: TC
Location: 47628 - 50066 (-)
Gene ID: Rep_816_c_7_50
Type: pfam
Location: 50081 - 50362 (-)
Gene ID: Rep_816_c_7_51
Type: TC
Location: 50362 - 50694 (-)
Gene ID: Rep_816_c_7_52
Type: TC
Location: 50691 - 51659 (-)
Gene ID: Rep_816_c_7_53
Type: pfam
Location: 51875 - 52354 (+)
Gene ID: Rep_816_c_7_54
Type:
Location: 52390 - 52821 (-)
Gene ID: Rep_816_c_7_55
Type: TC
Location: 52828 - 54810 (-)
Gene ID: Rep_816_c_7_56
Type: pfam
Location: 54836 - 56575 (-)
Gene ID: Rep_816_c_7_57
Type: CAZyme
Location: 56820 - 57593 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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