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Cluster: Rep_816_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_816_c_1 Rep_816_c_1_23 25122 27221 + GT51
pfam Rep_816_c_1 Rep_816_c_1_24 27249 27428 + BiPBP_C
CAZyme Rep_816_c_1 Rep_816_c_1_25 27479 29227 + GT83
pfam Rep_816_c_1 Rep_816_c_1_26 29228 30070 + PAP2
CAZyme Rep_816_c_1 Rep_816_c_1_27 30129 30884 + GT2
TC Rep_816_c_1 Rep_816_c_1_28 30884 31222 + 2.A.123.4.1
pfam Rep_816_c_1 Rep_816_c_1_29 31326 32522 - Cys_Met_Meta_PP
TC Rep_816_c_1 Rep_816_c_1_30 32771 33805 + 3.A.1.3.8
TC Rep_816_c_1 Rep_816_c_1_31 33826 35031 + 3.A.1.3.26
TC Rep_816_c_1 Rep_816_c_1_32 35028 36539 + 3.A.1.3.8
TC Rep_816_c_1 Rep_816_c_1_33 36549 37289 + 3.A.1.3.8
Gene ID: Rep_816_c_1_23
Type: CAZyme
Location: 25122 - 27221 (+)
Gene ID: Rep_816_c_1_24
Type: pfam
Location: 27249 - 27428 (+)
Gene ID: Rep_816_c_1_25
Type: CAZyme
Location: 27479 - 29227 (+)
Gene ID: Rep_816_c_1_26
Type: pfam
Location: 29228 - 30070 (+)
Gene ID: Rep_816_c_1_27
Type: CAZyme
Location: 30129 - 30884 (+)
Gene ID: Rep_816_c_1_28
Type: TC
Location: 30884 - 31222 (+)
Gene ID: Rep_816_c_1_29
Type: pfam
Location: 31326 - 32522 (-)
Gene ID: Rep_816_c_1_30
Type: TC
Location: 32771 - 33805 (+)
Gene ID: Rep_816_c_1_31
Type: TC
Location: 33826 - 35031 (+)
Gene ID: Rep_816_c_1_32
Type: TC
Location: 35028 - 36539 (+)
Gene ID: Rep_816_c_1_33
Type: TC
Location: 36549 - 37289 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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