Cluster: Rep_816_CGC23
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_816
- CGC Family ID: CGCFAM_10977
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_816_c_55 | Rep_816_c_55_2 | 1876 | 2835 | + | CE11 |
| TC | Rep_816_c_55 | Rep_816_c_55_3 | 3109 | 4002 | + | 1.B.33.1.4 |
| pfam | Rep_816_c_55 | Rep_816_c_55_4 | 4029 | 5702 | + | SMC_N | AAA_23 |
| pfam | Rep_816_c_55 | Rep_816_c_55_5 | 5711 | 7870 | + | BRCT | DNA_ligase_aden | DNA_ligase_ZBD | DNA_ligase_OB | HHH_2 |
| TC | Rep_816_c_55 | Rep_816_c_55_6 | 8022 | 9296 | - | 2.A.1.2.9 |
Gene ID: Rep_816_c_55_2
Type: CAZyme
Location: 1876 - 2835 (+)
Type: CAZyme
Location: 1876 - 2835 (+)
Gene ID: Rep_816_c_55_3
Type: TC
Location: 3109 - 4002 (+)
Type: TC
Location: 3109 - 4002 (+)
Gene ID: Rep_816_c_55_4
Type: pfam
Location: 4029 - 5702 (+)
Type: pfam
Location: 4029 - 5702 (+)
Gene ID: Rep_816_c_55_5
Type: pfam
Location: 5711 - 7870 (+)
Type: pfam
Location: 5711 - 7870 (+)
Gene ID: Rep_816_c_55_6
Type: TC
Location: 8022 - 9296 (-)
Type: TC
Location: 8022 - 9296 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhizobiales
Family
Xanthobacteraceae
Genus
Afipia
Species
Afipia broomeae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.