Cluster: Rep_816_CGC20
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_816
- CGC Family ID: CGCFAM_01353
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_816_c_45 | Rep_816_c_45_13 | 12798 | 14723 | + | 9.B.18.2.1 |
| TC | Rep_816_c_45 | Rep_816_c_45_14 | 14725 | 15738 | - | 9.B.146.1.2 |
| pfam | Rep_816_c_45 | Rep_816_c_45_15 | 15757 | 16605 | - | Ubie_methyltran | MTS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| NULL(UNKNOWN) | Rep_816_c_45 | Rep_816_c_45_16 | 16840 | 17214 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_816_c_45 | Rep_816_c_45_17 | 17242 | 18378 | - | GT4 |
| pfam | Rep_816_c_45 | Rep_816_c_45_18 | 18446 | 19273 | - | MTS | PrmA | Methyltransf_9 | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| CAZyme | Rep_816_c_45 | Rep_816_c_45_19 | 19330 | 20469 | - | GT4 |
| pfam | Rep_816_c_45 | Rep_816_c_45_20 | 20641 | 21489 | + | TylF | Methyltransf_24 |
| NULL(UNKNOWN) | Rep_816_c_45 | Rep_816_c_45_21 | 21511 | 22950 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_816_c_45 | Rep_816_c_45_22 | 23150 | 24337 | + | GT4 |
| peptidase | Rep_816_c_45 | Rep_816_c_45_23 | 24346 | 26223 | - | C44.001 |
| CAZyme | Rep_816_c_45 | Rep_816_c_45_24 | 26544 | 27983 | + | GT2 |
Gene ID: Rep_816_c_45_13
Type: TC
Location: 12798 - 14723 (+)
Type: TC
Location: 12798 - 14723 (+)
Gene ID: Rep_816_c_45_14
Type: TC
Location: 14725 - 15738 (-)
Type: TC
Location: 14725 - 15738 (-)
Gene ID: Rep_816_c_45_15
Type: pfam
Location: 15757 - 16605 (-)
Type: pfam
Location: 15757 - 16605 (-)
Gene ID: Rep_816_c_45_16
Type:
Location: 16840 - 17214 (+)
Type:
Location: 16840 - 17214 (+)
Gene ID: Rep_816_c_45_17
Type: CAZyme
Location: 17242 - 18378 (-)
Type: CAZyme
Location: 17242 - 18378 (-)
Gene ID: Rep_816_c_45_18
Type: pfam
Location: 18446 - 19273 (-)
Type: pfam
Location: 18446 - 19273 (-)
Gene ID: Rep_816_c_45_19
Type: CAZyme
Location: 19330 - 20469 (-)
Type: CAZyme
Location: 19330 - 20469 (-)
Gene ID: Rep_816_c_45_20
Type: pfam
Location: 20641 - 21489 (+)
Type: pfam
Location: 20641 - 21489 (+)
Gene ID: Rep_816_c_45_21
Type:
Location: 21511 - 22950 (-)
Type:
Location: 21511 - 22950 (-)
Gene ID: Rep_816_c_45_22
Type: CAZyme
Location: 23150 - 24337 (+)
Type: CAZyme
Location: 23150 - 24337 (+)
Gene ID: Rep_816_c_45_23
Type: peptidase
Location: 24346 - 26223 (-)
Type: peptidase
Location: 24346 - 26223 (-)
Gene ID: Rep_816_c_45_24
Type: CAZyme
Location: 26544 - 27983 (+)
Type: CAZyme
Location: 26544 - 27983 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhizobiales
Family
Xanthobacteraceae
Genus
Afipia
Species
Afipia broomeae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.